Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06550

Experiment: Iron excess (2.5x) , H2 media

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Iron excess (2.5x) , H2 media
1,207,291	-		MMJJ_RS06540	0.83	+0.2
1,207,303	+		MMJJ_RS06540	0.86	+3.7
1,207,313	+		MMJJ_RS06540	0.88	+1.8
1,207,350	+				-0.2
1,207,384	-				+0.4
1,207,404	-				-0.4
1,207,554	+		MMJJ_RS06545	0.24	-2.5
1,207,686	-		MMJJ_RS06545	0.44	-1.0
1,207,805	-		MMJJ_RS06545	0.62	-1.7
1,207,844	+				-0.4
1,208,010	+				-1.0
1,208,025	-				-2.5
1,208,025	-				-1.2
1,208,039	-				-2.2
1,208,076	-				-1.0
1,208,077	+				+1.2
1,208,077	+				-1.8
1,208,082	-				+2.0
1,208,082	-				-1.7
1,208,101	+				-0.4
1,208,102	-				+0.3
1,208,102	-				-1.2
1,208,102	-				-0.6
1,208,106	-				+0.4
1,208,106	-				-0.4
1,208,106	-				+0.7
1,208,133	+				+0.6
1,208,136	-				+0.7
1,208,139	-				+1.1
1,208,140	+				+2.0
1,208,140	+				+0.0
1,208,162	-				+1.1
1,208,165	+				+0.9
1,208,168	-				+0.1
1,208,169	+				-1.7
1,208,174	-				+0.1
1,208,179	-				+0.6
1,208,183	+				+1.5
1,208,183	+				+0.4
1,208,183	+				+2.3
1,208,183	+				-1.0
1,208,202	-				+2.2
1,208,212	-				+0.1
1,208,227	-				+0.8
1,208,277	-				-0.8
1,208,277	-				+0.2
1,208,289	-				+0.2
1,208,289	-				-0.2
1,208,290	+				+1.0
1,208,299	+				-1.1
1,208,364	-		MMJJ_RS06550	0.17	-1.4
1,208,365	+		MMJJ_RS06550	0.17	+0.8
1,208,368	-		MMJJ_RS06550	0.18	-2.1
1,208,369	+		MMJJ_RS06550	0.18	+1.1
1,208,369	+		MMJJ_RS06550	0.18	-0.7
1,208,382	-		MMJJ_RS06550	0.20	+1.1
1,208,382	-		MMJJ_RS06550	0.20	+0.9
1,208,382	-		MMJJ_RS06550	0.20	+1.9
1,208,382	-		MMJJ_RS06550	0.20	-0.1
1,208,382	-		MMJJ_RS06550	0.20	-1.2
1,208,383	+		MMJJ_RS06550	0.20	+0.7
1,208,383	+		MMJJ_RS06550	0.20	+0.1
1,208,383	+		MMJJ_RS06550	0.20	+1.4
1,208,383	+		MMJJ_RS06550	0.20	-0.6
1,208,433	-		MMJJ_RS06550	0.26	+0.4
1,208,444	-		MMJJ_RS06550	0.28	+0.9
1,208,448	-		MMJJ_RS06550	0.28	+2.1
1,208,449	+		MMJJ_RS06550	0.28	-0.1
1,208,460	+		MMJJ_RS06550	0.30	+1.4
1,208,494	-		MMJJ_RS06550	0.34	+1.3
1,208,494	-		MMJJ_RS06550	0.34	-0.2
1,208,537	+		MMJJ_RS06550	0.40	+1.3
1,208,545	+		MMJJ_RS06550	0.41	-1.2
1,208,628	-		MMJJ_RS06550	0.52	+1.1
1,208,628	-		MMJJ_RS06550	0.52	+0.3
1,208,629	+		MMJJ_RS06550	0.52	+0.0
1,208,629	+		MMJJ_RS06550	0.52	+1.7
1,208,631	-		MMJJ_RS06550	0.52	+0.4
1,208,632	+		MMJJ_RS06550	0.52	+1.1
1,208,654	-		MMJJ_RS06550	0.55	-0.7
1,208,654	-		MMJJ_RS06550	0.55	-2.0
1,208,654	-		MMJJ_RS06550	0.55	+0.4
1,208,655	+		MMJJ_RS06550	0.55	+1.1
1,208,655	+		MMJJ_RS06550	0.55	+1.0
1,208,661	-		MMJJ_RS06550	0.56	+1.5
1,208,822	+		MMJJ_RS06550	0.77	+1.4
1,208,822	+		MMJJ_RS06550	0.77	+1.3
1,208,841	-		MMJJ_RS06550	0.79	+0.5
1,208,842	+		MMJJ_RS06550	0.80	+0.7
1,208,847	-		MMJJ_RS06550	0.80	+1.0
1,208,848	+		MMJJ_RS06550	0.80	-0.9
1,208,848	+		MMJJ_RS06550	0.80	+0.1
1,208,848	+		MMJJ_RS06550	0.80	+4.5
1,208,852	-		MMJJ_RS06550	0.81	-0.2
1,208,853	+		MMJJ_RS06550	0.81	-1.2
1,208,853	+		MMJJ_RS06550	0.81	-0.7
1,208,888	+		MMJJ_RS06550	0.86	+0.9
1,208,901	+		MMJJ_RS06550	0.87	+2.2
1,208,908	-		MMJJ_RS06550	0.88	+0.4
1,208,908	-		MMJJ_RS06550	0.88	+1.7
1,208,908	-		MMJJ_RS06550	0.88	+0.5
1,208,909	+		MMJJ_RS06550	0.88	-0.1
1,208,932	-				-0.5
1,208,935	-				+2.5
1,208,943	-				+0.7
1,208,943	-				-1.2
1,208,951	+				+1.0
1,208,951	+				+2.4
1,208,951	+				+0.5
1,208,968	+				+0.9
1,208,968	+				+1.0
1,208,979	-				-0.1
1,208,979	-				+1.2
1,208,979	-				+0.5
1,208,979	-				+0.8
1,208,984	-				+0.7
1,208,984	-				+0.6
1,208,984	-				-0.6
1,208,985	+				+2.4
1,208,986	-				-0.5
1,208,986	-				+1.2
1,208,987	+				+1.7
1,208,987	+				+0.7
1,209,006	-				+0.2
1,209,006	-				+0.8
1,209,009	+				-0.0
1,209,009	+				+0.2
1,209,009	+				+0.5
1,209,009	+				+0.2
1,209,018	-				+0.1
1,209,018	-				+0.3
1,209,018	-				-0.6
1,209,019	+				+0.3
1,209,019	+				-0.1
1,209,032	-				+1.9
1,209,037	+				+0.5
1,209,037	+				+0.6
1,209,061	+				+1.4
1,209,074	-				+0.2
1,209,074	-				+0.0
1,209,091	-				-1.5
1,209,091	-				+1.9
1,209,134	-		MMJJ_RS06555	0.13	-0.6
1,209,180	+		MMJJ_RS06555	0.18	+2.5
1,209,182	+		MMJJ_RS06555	0.18	+0.5
1,209,198	-		MMJJ_RS06555	0.20	+1.2
1,209,277	-		MMJJ_RS06555	0.28	+0.0
1,209,278	+		MMJJ_RS06555	0.28	+0.1
1,209,293	+		MMJJ_RS06555	0.30	-0.2
1,209,306	-		MMJJ_RS06555	0.31	+2.5
1,209,306	-				-1.2
1,209,307	+		MMJJ_RS06555	0.31	-0.3
1,209,342	+		MMJJ_RS06555	0.35	+0.1
1,209,366	-		MMJJ_RS06555	0.38	-1.7
1,209,375	-		MMJJ_RS06555	0.39	+0.6
1,209,376	+		MMJJ_RS06555	0.39	-0.5
1,209,401	-		MMJJ_RS06555	0.41	+2.9
1,209,401	-		MMJJ_RS06555	0.41	-1.9
1,209,401	-		MMJJ_RS06555	0.41	+0.6
1,209,401	-		MMJJ_RS06555	0.41	+1.0
1,209,401	-		MMJJ_RS06555	0.41	+1.0
1,209,401	-		MMJJ_RS06555	0.41	+0.4
1,209,402	+		MMJJ_RS06555	0.41	+0.1
1,209,402	+		MMJJ_RS06555	0.41	+0.3
1,209,402	+		MMJJ_RS06555	0.41	-1.2
1,209,402	+		MMJJ_RS06555	0.41	+1.4
1,209,443	-		MMJJ_RS06555	0.46	+3.1
1,209,443	-		MMJJ_RS06555	0.46	+0.4
1,209,443	-		MMJJ_RS06555	0.46	+0.9
1,209,443	-		MMJJ_RS06555	0.46	-0.9
1,209,443	-		MMJJ_RS06555	0.46	-0.0
1,209,444	+		MMJJ_RS06555	0.46	-1.6
1,209,503	-		MMJJ_RS06555	0.52	-2.3
1,209,503	-		MMJJ_RS06555	0.52	+1.1
1,209,515	-		MMJJ_RS06555	0.53	+0.4
1,209,515	-		MMJJ_RS06555	0.53	+0.3
1,209,516	+		MMJJ_RS06555	0.54	+1.1
1,209,516	+		MMJJ_RS06555	0.54	-1.0
1,209,545	-		MMJJ_RS06555	0.57	+3.0
1,209,545	-		MMJJ_RS06555	0.57	+0.4
1,209,546	+		MMJJ_RS06555	0.57	+0.6
1,209,546	+		MMJJ_RS06555	0.57	-0.2
1,209,563	-		MMJJ_RS06555	0.59	+0.8
1,209,563	-		MMJJ_RS06555	0.59	+1.9
1,209,563	-		MMJJ_RS06555	0.59	+0.7
1,209,564	+		MMJJ_RS06555	0.59	+0.3
1,209,630	+		MMJJ_RS06555	0.66	-0.7
1,209,657	-		MMJJ_RS06555	0.69	-0.1
1,209,681	+		MMJJ_RS06555	0.71	+1.5
1,209,705	-		MMJJ_RS06555	0.74	+1.1
1,209,707	-		MMJJ_RS06555	0.74	-1.0
1,209,708	+		MMJJ_RS06555	0.74	+0.3
1,209,749	-		MMJJ_RS06555	0.78	+1.1
1,209,750	+		MMJJ_RS06555	0.78	+1.5
1,209,812	-		MMJJ_RS06555	0.85	+0.6
1,209,846	-		MMJJ_RS06555	0.89	+0.9
1,209,847	+		MMJJ_RS06555	0.89	+1.0
1,209,900	-				+0.6
1,209,901	+				+1.1
1,209,910	+				+1.2
1,209,910	+				+1.7
1,209,910	+				-0.7
1,209,910	+				-0.6
1,209,919	+				+1.0
1,209,921	-				+0.5
1,209,921	-				+0.3
1,209,921	-				+1.3
1,209,922	+				+1.1
1,209,922	+				-1.1
1,209,925	-				+1.4
1,209,925	-				+0.5
1,209,926	+				-0.4
1,209,949	-				+0.6
1,209,949	-				+1.7
1,209,954	-				+0.7
1,209,961	+				+1.0
1,209,971	+				+0.3
1,209,975	-				+1.0
1,209,976	+				+0.3