Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06475

Experiment: Iron excess (2.5x) , H2 media

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Iron excess (2.5x) , H2 media
1,193,969	-		MMJJ_RS06470	0.34	+1.2
1,193,980	-		MMJJ_RS06470	0.35	+1.9
1,193,981	+		MMJJ_RS06470	0.35	-1.0
1,193,999	-		MMJJ_RS06470	0.36	+1.1
1,194,027	+		MMJJ_RS06470	0.38	+0.9
1,194,034	-		MMJJ_RS06470	0.39	-0.2
1,194,062	-		MMJJ_RS06470	0.41	+0.7
1,194,067	-		MMJJ_RS06470	0.42	-0.2
1,194,073	+		MMJJ_RS06470	0.42	+0.8
1,194,110	+		MMJJ_RS06470	0.45	+0.3
1,194,113	-		MMJJ_RS06470	0.46	+1.9
1,194,113	-		MMJJ_RS06470	0.46	+0.8
1,194,156	+		MMJJ_RS06470	0.49	+0.2
1,194,179	-		MMJJ_RS06470	0.51	+1.3
1,194,247	-		MMJJ_RS06470	0.57	-0.0
1,194,253	-		MMJJ_RS06470	0.57	+1.5
1,194,254	+		MMJJ_RS06470	0.57	+1.7
1,194,254	+		MMJJ_RS06470	0.57	-0.3
1,194,254	+		MMJJ_RS06470	0.57	+1.2
1,194,257	-		MMJJ_RS06470	0.58	+1.0
1,194,285	+		MMJJ_RS06470	0.60	+2.7
1,194,299	-		MMJJ_RS06470	0.61	+0.7
1,194,307	-		MMJJ_RS06470	0.62	+1.6
1,194,307	-		MMJJ_RS06470	0.62	+0.2
1,194,352	-		MMJJ_RS06470	0.66	+1.4
1,194,353	+		MMJJ_RS06470	0.66	+1.0
1,194,428	-		MMJJ_RS06470	0.72	+0.6
1,194,450	-		MMJJ_RS06470	0.74	-0.7
1,194,450	-		MMJJ_RS06470	0.74	+1.6
1,194,478	-		MMJJ_RS06470	0.76	+0.6
1,194,512	+		MMJJ_RS06470	0.79	+1.2
1,194,529	+		MMJJ_RS06470	0.80	+0.9
1,194,608	+		MMJJ_RS06470	0.87	+0.6
1,194,636	-		MMJJ_RS06470	0.89	+0.6
1,194,647	+				+0.5
1,194,649	-				+0.9
1,194,651	-				+1.2
1,194,651	-				+2.2
1,194,651	-				+0.7
1,194,651	-				+1.1
1,194,651	-				+3.0
1,194,652	+				+0.6
1,194,652	+				+1.4
1,194,652	+				-0.9
1,194,655	-				+0.3
1,194,656	+				+0.5
1,194,656	+				-0.8
1,194,656	+				+0.2
1,194,679	-				+1.8
1,194,704	+				+1.4
1,194,721	-				+0.2
1,194,722	+				+2.6
1,194,722	+				+1.6
1,194,722	+				+0.8
1,194,722	+				+0.5
1,194,722	+				+0.7
1,194,724	-				+3.6
1,194,724	-				+0.1
1,194,724	-				+0.4
1,194,724	-				+1.1
1,194,725	+				+1.8
1,194,727	-				-0.1
1,194,727	-				+1.6
1,194,745	+				-0.2
1,194,759	-				-1.7
1,194,760	+				+0.7
1,194,782	-				-1.4
1,194,782	-				+1.2
1,194,782	-				+2.0
1,194,805	-				+1.4
1,194,805	-				-2.0
1,194,806	+				+1.0
1,194,812	+				+0.6
1,194,857	+		MMJJ_RS06475	0.16	+1.5
1,194,859	-		MMJJ_RS06475	0.16	-0.8
1,194,859	-		MMJJ_RS06475	0.16	+0.4
1,194,860	+		MMJJ_RS06475	0.17	-1.3
1,194,861	-		MMJJ_RS06475	0.17	-0.1
1,194,862	+		MMJJ_RS06475	0.17	+0.2
1,194,889	-		MMJJ_RS06475	0.22	+0.5
1,194,931	-		MMJJ_RS06475	0.30	+0.1
1,194,932	+		MMJJ_RS06475	0.30	+0.5
1,194,932	+		MMJJ_RS06475	0.30	+0.7
1,194,946	-		MMJJ_RS06475	0.32	-0.5
1,194,946	-		MMJJ_RS06475	0.32	+1.6
1,194,947	+		MMJJ_RS06475	0.33	+0.6
1,194,990	+		MMJJ_RS06475	0.40	+0.1
1,195,061	+		MMJJ_RS06475	0.53	-0.3
1,195,093	+		MMJJ_RS06475	0.59	+0.8
1,195,093	+		MMJJ_RS06475	0.59	+0.1
1,195,093	+		MMJJ_RS06475	0.59	+1.8
1,195,118	-		MMJJ_RS06475	0.64	-0.8
1,195,119	+		MMJJ_RS06475	0.64	+0.9
1,195,119	+		MMJJ_RS06475	0.64	+1.4
1,195,148	-		MMJJ_RS06475	0.69	+1.6
1,195,213	-		MMJJ_RS06475	0.81	-0.1
1,195,238	+		MMJJ_RS06475	0.86	-0.2
1,195,238	+		MMJJ_RS06475	0.86	+0.2
1,195,238	+		MMJJ_RS06475	0.86	+0.6
1,195,267	-				-0.4
1,195,272	-				-1.5
1,195,273	+				-1.9
1,195,307	+				+1.2
1,195,307	+				+1.5
1,195,310	+				-0.6
1,195,310	+				+1.2
1,195,312	-				+0.7
1,195,313	+				-1.2
1,195,314	-				+0.7
1,195,324	-				+0.4
1,195,324	-				+1.6
1,195,325	+				+0.4
1,195,325	+				-1.0
1,195,325	+				+1.1
1,195,360	-				-0.9
1,195,360	-				-0.7
1,195,360	-				+1.1
1,195,361	+				-0.3
1,195,361	+				-1.1
1,195,361	+				-0.2
1,195,445	+		MMJJ_RS06480	0.27	-0.1
1,195,470	-		MMJJ_RS06480	0.32	-1.5
1,195,509	-		MMJJ_RS06480	0.41	-0.2
1,195,511	-		MMJJ_RS06480	0.42	-0.8
1,195,511	-		MMJJ_RS06480	0.42	-2.0
1,195,511	-		MMJJ_RS06480	0.42	+0.0
1,195,511	-		MMJJ_RS06480	0.42	-0.4
1,195,512	+		MMJJ_RS06480	0.42	+0.1
1,195,524	-		MMJJ_RS06480	0.44	-0.3
1,195,524	-		MMJJ_RS06480	0.44	+0.2
1,195,527	-		MMJJ_RS06480	0.45	+0.2
1,195,528	+		MMJJ_RS06480	0.45	-0.9
1,195,530	+		MMJJ_RS06480	0.46	+0.5
1,195,562	-		MMJJ_RS06480	0.53	+0.4
1,195,595	-		MMJJ_RS06480	0.60	+1.4
1,195,596	+		MMJJ_RS06480	0.60	+0.7
1,195,604	-		MMJJ_RS06480	0.62	-0.3
1,195,628	-		MMJJ_RS06480	0.67	+0.8
1,195,670	+		MMJJ_RS06480	0.77	+0.6
1,195,678	-		MMJJ_RS06480	0.78	-2.0
1,195,690	+		MMJJ_RS06480	0.81	+0.3
1,195,692	-		MMJJ_RS06480	0.81	+1.0
1,195,692	-		MMJJ_RS06480	0.81	-1.6
1,195,693	+		MMJJ_RS06480	0.82	-0.7
1,195,693	+		MMJJ_RS06480	0.82	+0.4
1,195,699	-		MMJJ_RS06480	0.83	-0.5
1,195,699	-		MMJJ_RS06480	0.83	+0.5
1,195,700	+		MMJJ_RS06480	0.83	+0.0
1,195,700	+		MMJJ_RS06480	0.83	-0.7
1,195,700	+		MMJJ_RS06480	0.83	-2.7
1,195,700	+		MMJJ_RS06480	0.83	-1.2
1,195,700	+		MMJJ_RS06480	0.83	+0.5
1,195,713	-		MMJJ_RS06480	0.86	-1.0
1,195,739	-				-0.3
1,195,753	+				-0.6
1,195,753	+				-1.4
1,195,808	-				+0.8
1,195,808	-				-0.4
1,195,809	+				-2.4
1,195,809	+				+1.3
1,195,818	-				+0.7
1,195,818	-				-1.3
1,195,819	+				+1.2
1,195,819	+				-1.3
1,195,821	+				-0.7
1,195,823	-				-0.7
1,195,823	-				-0.2
1,195,823	-				-0.0
1,195,823	-				-1.3
1,195,823	-				-0.1
1,195,824	+				+2.2
1,195,829	-				-1.7
1,195,829	-				-0.5
1,195,830	+				-0.1
1,195,830	+				+1.3
1,195,831	-				+0.7
1,195,831	-				-0.2
1,195,832	+				-0.0
1,195,832	+				+0.5
1,195,832	+				+1.1
1,195,832	+				-1.4
1,195,833	-				-0.7
1,195,834	+				-1.4
1,195,842	-				-2.3
1,195,843	+				-0.2
1,195,883	-				+1.2
1,195,884	+				-0.8
1,195,888	+				+0.4
1,195,890	-				+1.4
1,195,890	-				+0.2
1,195,890	-				+0.2
1,195,890	-				-0.4
1,195,890	-				+1.5
1,195,890	-				+1.4
1,195,891	+				+1.1
1,195,891	+				-0.6
1,195,891	+				+0.4
1,195,891	+				+1.7
1,195,891	+				+0.6
1,195,891	+				+0.6
1,195,891	+				+0.4
1,195,891	+				-2.4
1,195,891	+				+1.6
1,195,891	+				+1.1
1,195,892	-				+1.4
1,195,892	-				-0.4
1,195,892	-				+0.2
1,195,892	-				+1.8
1,195,892	-				+0.6
1,195,893	+				+1.3
1,195,893	+				-0.1
1,195,893	+				+1.9
1,195,893	+				+0.4
1,195,893	+				+0.3
1,195,893	+				+0.7
1,195,893	+				+0.7
1,195,893	+				-0.9
1,195,893	+				+0.5
1,195,893	+				+1.0
1,195,893	+				+0.1
1,195,893	+				-1.2
1,195,918	+				+1.8
1,195,918	+				-0.1
1,195,918	+				+0.9
1,195,921	-				-1.0
1,195,922	+				+0.4
1,195,922	+				+1.5
1,195,922	+				+0.7
1,195,922	-				-0.7
1,195,924	-				-0.6
1,195,925	+				+0.5
1,195,934	-				+0.5
1,195,970	-				-0.7
1,195,970	-				+0.7
1,195,971	+				+0.5
1,195,982	+				+0.7
1,196,007	+				+0.1
1,196,007	+				-0.0
1,196,009	-				+1.6
1,196,010	+				+0.5
1,196,014	-				+1.2
1,196,016	-				+0.9
1,196,016	-				-2.2
1,196,017	+				+0.8
1,196,017	+				+0.3
1,196,017	+				+1.3
1,196,017	+				+0.3
1,196,017	+				+1.0
1,196,020	-				-0.2
1,196,021	+				+0.5
1,196,021	+				+0.2
1,196,021	+				+0.8
1,196,023	-				-1.6
1,196,024	+				+0.4
1,196,041	-				-2.4
1,196,042	+				-0.5
1,196,048	+				+2.2
1,196,051	+				-0.7
1,196,054	+				-1.7
1,196,067	+				-0.2
1,196,067	+				-0.1
1,196,067	+				-0.2
1,196,067	+				-2.1
1,196,072	+				-0.1
1,196,072	+				-2.1
1,196,075	-				-2.4
1,196,096	+				-1.0
1,196,205	+				+0.6
1,196,247	+				-2.3
1,196,270	-		MMJJ_RS06485	0.10	-2.5
1,196,306	+		MMJJ_RS06485	0.13	-2.1