Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06470

Experiment: Iron excess (2.5x) , H2 media

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Iron excess (2.5x) , H2 media
1,192,581	-		MMJJ_RS06460	0.64	-0.6
1,192,606	+		MMJJ_RS06460	0.69	+0.1
1,192,655	+		MMJJ_RS06460	0.80	+0.9
1,192,671	-		MMJJ_RS06460	0.84	+0.7
1,192,672	+		MMJJ_RS06460	0.84	+1.6
1,192,672	+		MMJJ_RS06460	0.84	+1.0
1,192,672	+		MMJJ_RS06460	0.84	+0.3
1,192,672	+		MMJJ_RS06460	0.84	-1.7
1,192,677	+		MMJJ_RS06460	0.85	+2.2
1,192,695	-		MMJJ_RS06460	0.89	+2.4
1,192,695	-		MMJJ_RS06460	0.89	+1.3
1,192,696	+		MMJJ_RS06460	0.89	+1.9
1,192,748	+				-0.4
1,192,780	-				+0.9
1,192,784	+				+1.6
1,192,784	+				+0.8
1,192,828	-				+0.3
1,192,836	-				-0.7
1,192,836	-				-1.5
1,192,836	-				+0.6
1,192,836	-				+0.8
1,192,836	-				-0.7
1,192,836	-				+1.3
1,192,836	-				-0.1
1,192,836	-				+1.2
1,192,836	-				+1.7
1,192,836	-				-1.0
1,192,836	-				+1.6
1,192,836	-				+2.6
1,192,836	-				+1.4
1,192,836	-				+0.2
1,192,836	-				+0.0
1,192,836	-				+1.4
1,192,836	-				-1.5
1,192,836	-				-0.8
1,192,836	-				-1.1
1,192,837	+				+0.9
1,192,837	+				-2.0
1,192,837	+				+1.4
1,192,837	+				+2.4
1,192,837	+				-0.4
1,192,837	+				-1.6
1,192,837	+				+0.0
1,192,837	+				+0.0
1,192,837	+				+0.8
1,192,837	+				+0.4
1,192,837	+				+0.9
1,192,837	+				-1.0
1,192,837	+				+0.1
1,192,841	+				-0.2
1,192,841	+				-1.1
1,192,847	+				+1.0
1,192,869	+				-0.0
1,192,891	+				+1.0
1,192,893	+				+0.0
1,192,905	+				+1.8
1,192,964	+				+0.8
1,192,966	-				+0.6
1,192,967	+				+0.7
1,192,967	+				+2.6
1,192,970	+				+0.7
1,192,970	+				+0.6
1,192,970	+				+1.7
1,192,999	-				+0.6
1,192,999	-				-1.4
1,193,000	+				+0.4
1,193,014	-				+0.9
1,193,063	-		MMJJ_RS06465	0.18	-0.9
1,193,088	-		MMJJ_RS06465	0.22	+0.4
1,193,088	-		MMJJ_RS06465	0.22	-0.1
1,193,089	+		MMJJ_RS06465	0.22	+0.7
1,193,089	+		MMJJ_RS06465	0.22	-0.1
1,193,099	+		MMJJ_RS06465	0.24	+1.5
1,193,105	-		MMJJ_RS06465	0.25	-1.6
1,193,106	+		MMJJ_RS06465	0.25	+0.1
1,193,150	-		MMJJ_RS06465	0.32	+1.3
1,193,168	-		MMJJ_RS06465	0.35	+0.5
1,193,267	+		MMJJ_RS06465	0.51	+0.4
1,193,404	+		MMJJ_RS06465	0.74	+0.9
1,193,415	-		MMJJ_RS06465	0.75	+3.6
1,193,415	-		MMJJ_RS06465	0.75	-0.7
1,193,415	-		MMJJ_RS06465	0.75	-0.4
1,193,415	-		MMJJ_RS06465	0.75	-0.7
1,193,416	+		MMJJ_RS06465	0.76	+1.1
1,193,416	+		MMJJ_RS06465	0.76	+0.8
1,193,419	+		MMJJ_RS06465	0.76	+0.5
1,193,419	+		MMJJ_RS06465	0.76	-0.4
1,193,435	-		MMJJ_RS06465	0.79	-0.1
1,193,436	+		MMJJ_RS06465	0.79	+1.9
1,193,442	-		MMJJ_RS06465	0.80	+0.6
1,193,442	-		MMJJ_RS06465	0.80	-1.3
1,193,443	+		MMJJ_RS06465	0.80	-0.6
1,193,443	+		MMJJ_RS06465	0.80	-0.2
1,193,545	+				+0.6
1,193,545	+				+0.1
1,193,623	-				+0.2
1,193,693	-		MMJJ_RS06470	0.10	+1.7
1,193,698	+		MMJJ_RS06470	0.11	+0.2
1,193,969	-		MMJJ_RS06470	0.34	+1.2
1,193,980	-		MMJJ_RS06470	0.35	+1.9
1,193,981	+		MMJJ_RS06470	0.35	-1.0
1,193,999	-		MMJJ_RS06470	0.36	+1.1
1,194,027	+		MMJJ_RS06470	0.38	+0.9
1,194,034	-		MMJJ_RS06470	0.39	-0.2
1,194,062	-		MMJJ_RS06470	0.41	+0.7
1,194,067	-		MMJJ_RS06470	0.42	-0.2
1,194,073	+		MMJJ_RS06470	0.42	+0.8
1,194,110	+		MMJJ_RS06470	0.45	+0.3
1,194,113	-		MMJJ_RS06470	0.46	+1.9
1,194,113	-		MMJJ_RS06470	0.46	+0.8
1,194,156	+		MMJJ_RS06470	0.49	+0.2
1,194,179	-		MMJJ_RS06470	0.51	+1.3
1,194,247	-		MMJJ_RS06470	0.57	-0.0
1,194,253	-		MMJJ_RS06470	0.57	+1.5
1,194,254	+		MMJJ_RS06470	0.57	+1.7
1,194,254	+		MMJJ_RS06470	0.57	-0.3
1,194,254	+		MMJJ_RS06470	0.57	+1.2
1,194,257	-		MMJJ_RS06470	0.58	+1.0
1,194,285	+		MMJJ_RS06470	0.60	+2.7
1,194,299	-		MMJJ_RS06470	0.61	+0.7
1,194,307	-		MMJJ_RS06470	0.62	+1.6
1,194,307	-		MMJJ_RS06470	0.62	+0.2
1,194,352	-		MMJJ_RS06470	0.66	+1.4
1,194,353	+		MMJJ_RS06470	0.66	+1.0
1,194,428	-		MMJJ_RS06470	0.72	+0.6
1,194,450	-		MMJJ_RS06470	0.74	-0.7
1,194,450	-		MMJJ_RS06470	0.74	+1.6
1,194,478	-		MMJJ_RS06470	0.76	+0.6
1,194,512	+		MMJJ_RS06470	0.79	+1.2
1,194,529	+		MMJJ_RS06470	0.80	+0.9
1,194,608	+		MMJJ_RS06470	0.87	+0.6
1,194,636	-		MMJJ_RS06470	0.89	+0.6
1,194,647	+				+0.5
1,194,649	-				+0.9
1,194,651	-				+1.2
1,194,651	-				+2.2
1,194,651	-				+0.7
1,194,651	-				+1.1
1,194,651	-				+3.0
1,194,652	+				+0.6
1,194,652	+				+1.4
1,194,652	+				-0.9
1,194,655	-				+0.3
1,194,656	+				+0.5
1,194,656	+				-0.8
1,194,656	+				+0.2
1,194,679	-				+1.8
1,194,704	+				+1.4
1,194,721	-				+0.2
1,194,722	+				+2.6
1,194,722	+				+1.6
1,194,722	+				+0.8
1,194,722	+				+0.5
1,194,722	+				+0.7
1,194,724	-				+3.6
1,194,724	-				+0.1
1,194,724	-				+0.4
1,194,724	-				+1.1
1,194,725	+				+1.8
1,194,727	-				-0.1
1,194,727	-				+1.6
1,194,745	+				-0.2
1,194,759	-				-1.7
1,194,760	+				+0.7
1,194,782	-				-1.4
1,194,782	-				+1.2
1,194,782	-				+2.0
1,194,805	-				+1.4
1,194,805	-				-2.0
1,194,806	+				+1.0
1,194,812	+				+0.6
1,194,857	+		MMJJ_RS06475	0.16	+1.5
1,194,859	-		MMJJ_RS06475	0.16	-0.8
1,194,859	-		MMJJ_RS06475	0.16	+0.4
1,194,860	+		MMJJ_RS06475	0.17	-1.3
1,194,861	-		MMJJ_RS06475	0.17	-0.1
1,194,862	+		MMJJ_RS06475	0.17	+0.2
1,194,889	-		MMJJ_RS06475	0.22	+0.5
1,194,931	-		MMJJ_RS06475	0.30	+0.1
1,194,932	+		MMJJ_RS06475	0.30	+0.5
1,194,932	+		MMJJ_RS06475	0.30	+0.7
1,194,946	-		MMJJ_RS06475	0.32	-0.5
1,194,946	-		MMJJ_RS06475	0.32	+1.6
1,194,947	+		MMJJ_RS06475	0.33	+0.6
1,194,990	+		MMJJ_RS06475	0.40	+0.1
1,195,061	+		MMJJ_RS06475	0.53	-0.3
1,195,093	+		MMJJ_RS06475	0.59	+0.8
1,195,093	+		MMJJ_RS06475	0.59	+0.1
1,195,093	+		MMJJ_RS06475	0.59	+1.8
1,195,118	-		MMJJ_RS06475	0.64	-0.8
1,195,119	+		MMJJ_RS06475	0.64	+0.9
1,195,119	+		MMJJ_RS06475	0.64	+1.4
1,195,148	-		MMJJ_RS06475	0.69	+1.6
1,195,213	-		MMJJ_RS06475	0.81	-0.1
1,195,238	+		MMJJ_RS06475	0.86	-0.2
1,195,238	+		MMJJ_RS06475	0.86	+0.2
1,195,238	+		MMJJ_RS06475	0.86	+0.6
1,195,267	-				-0.4
1,195,272	-				-1.5
1,195,273	+				-1.9
1,195,307	+				+1.2
1,195,307	+				+1.5
1,195,310	+				-0.6
1,195,310	+				+1.2
1,195,312	-				+0.7
1,195,313	+				-1.2
1,195,314	-				+0.7
1,195,324	-				+0.4
1,195,324	-				+1.6
1,195,325	+				+0.4
1,195,325	+				-1.0
1,195,325	+				+1.1
1,195,360	-				-0.9
1,195,360	-				-0.7
1,195,360	-				+1.1
1,195,361	+				-0.3
1,195,361	+				-1.1
1,195,361	+				-0.2
1,195,445	+		MMJJ_RS06480	0.27	-0.1
1,195,470	-		MMJJ_RS06480	0.32	-1.5
1,195,509	-		MMJJ_RS06480	0.41	-0.2
1,195,511	-		MMJJ_RS06480	0.42	-0.8
1,195,511	-		MMJJ_RS06480	0.42	-2.0
1,195,511	-		MMJJ_RS06480	0.42	+0.0
1,195,511	-		MMJJ_RS06480	0.42	-0.4
1,195,512	+		MMJJ_RS06480	0.42	+0.1
1,195,524	-		MMJJ_RS06480	0.44	-0.3
1,195,524	-		MMJJ_RS06480	0.44	+0.2
1,195,527	-		MMJJ_RS06480	0.45	+0.2
1,195,528	+		MMJJ_RS06480	0.45	-0.9
1,195,530	+		MMJJ_RS06480	0.46	+0.5
1,195,562	-		MMJJ_RS06480	0.53	+0.4
1,195,595	-		MMJJ_RS06480	0.60	+1.4
1,195,596	+		MMJJ_RS06480	0.60	+0.7
1,195,604	-		MMJJ_RS06480	0.62	-0.3
1,195,628	-		MMJJ_RS06480	0.67	+0.8
1,195,670	+		MMJJ_RS06480	0.77	+0.6
1,195,678	-		MMJJ_RS06480	0.78	-2.0
1,195,690	+		MMJJ_RS06480	0.81	+0.3
1,195,692	-		MMJJ_RS06480	0.81	+1.0
1,195,692	-		MMJJ_RS06480	0.81	-1.6
1,195,693	+		MMJJ_RS06480	0.82	-0.7
1,195,693	+		MMJJ_RS06480	0.82	+0.4
1,195,699	-		MMJJ_RS06480	0.83	-0.5
1,195,699	-		MMJJ_RS06480	0.83	+0.5
1,195,700	+		MMJJ_RS06480	0.83	+0.0
1,195,700	+		MMJJ_RS06480	0.83	-0.7
1,195,700	+		MMJJ_RS06480	0.83	-2.7
1,195,700	+		MMJJ_RS06480	0.83	-1.2
1,195,700	+		MMJJ_RS06480	0.83	+0.5
1,195,713	-		MMJJ_RS06480	0.86	-1.0
1,195,739	-				-0.3
1,195,753	+				-0.6
1,195,753	+				-1.4