Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06235

Experiment: Iron excess (2.5x) , H2 media

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Iron excess (2.5x) , H2 media
1,154,756	-		MMJJ_RS06225	0.47	-2.8
1,154,757	+		MMJJ_RS06225	0.47	-1.5
1,154,772	+		MMJJ_RS06225	0.51	-0.7
1,154,774	-				+0.6
1,155,006	-				-1.1
1,155,032	-				+1.1
1,155,032	-				-1.8
1,155,032	-				+0.7
1,155,032	-				+0.4
1,155,032	-				-1.1
1,155,033	+				-0.1
1,155,033	+				-1.3
1,155,044	-				+1.3
1,155,044	-				+0.1
1,155,047	-				+1.6
1,155,050	+				-1.5
1,155,055	-				-0.7
1,155,056	+				-0.8
1,155,056	+				+0.6
1,155,060	-				-1.5
1,155,060	-				-0.4
1,155,061	+				-1.8
1,155,061	+				+0.6
1,155,066	-				+0.2
1,155,066	-				+0.9
1,155,066	-				+1.4
1,155,066	-				+0.9
1,155,067	+				-0.2
1,155,067	+				-1.5
1,155,067	+				-2.4
1,155,067	+				+0.0
1,155,067	+				-0.7
1,155,067	+				-1.3
1,155,067	+				-2.3
1,155,068	-				-0.5
1,155,068	-				-1.8
1,155,068	-				+0.3
1,155,068	-				-0.8
1,155,068	-				-0.2
1,155,068	-				+1.0
1,155,068	-				+0.9
1,155,068	-				+0.2
1,155,069	+				-0.7
1,155,069	+				-1.2
1,155,069	+				-0.2
1,155,069	+				-1.2
1,155,069	+				+0.4
1,155,070	-				-0.9
1,155,070	-				+1.5
1,155,070	-				+0.1
1,155,070	-				-0.1
1,155,070	-				+1.1
1,155,070	-				+0.9
1,155,070	-				+0.6
1,155,070	-				+0.5
1,155,070	-				+0.1
1,155,070	-				-0.4
1,155,071	+				-2.4
1,155,071	+				+0.2
1,155,071	+				-1.0
1,155,071	+				+1.6
1,155,071	+				+0.6
1,155,071	+				+1.6
1,155,071	+				+0.3
1,155,071	+				+1.8
1,155,075	-				+0.2
1,155,075	-				-0.9
1,155,075	-				+1.7
1,155,075	-				+0.9
1,155,076	+				+1.3
1,155,076	+				+0.7
1,155,329	-		MMJJ_RS06230	0.52	-1.2
1,155,409	-		MMJJ_RS06230	0.68	-1.8
1,155,613	-				+0.4
1,155,614	+				-1.1
1,155,618	+				-1.6
1,155,669	-				+1.6
1,155,808	+				+1.3
1,155,828	-				+0.5
1,155,828	-				+0.6
1,155,851	-				+1.7
1,155,864	-				+0.0
1,155,872	-				+0.4
1,155,873	+				+0.6
1,155,883	+				-2.8
1,155,924	-				-0.2
1,155,924	-				+0.0
1,155,962	-		MMJJ_RS06235	0.11	+1.2
1,155,969	-				+0.6
1,155,969	-		MMJJ_RS06235	0.12	+0.6
1,155,970	+		MMJJ_RS06235	0.12	+0.8
1,155,985	+		MMJJ_RS06235	0.12	+0.5
1,155,998	-		MMJJ_RS06235	0.13	+0.6
1,156,000	-		MMJJ_RS06235	0.13	+1.6
1,156,000	-		MMJJ_RS06235	0.13	-1.1
1,156,001	+		MMJJ_RS06235	0.13	+0.8
1,156,006	+		MMJJ_RS06235	0.13	-0.0
1,156,026	-		MMJJ_RS06235	0.15	+1.0
1,156,029	-		MMJJ_RS06235	0.15	+2.0
1,156,030	+		MMJJ_RS06235	0.15	+1.5
1,156,030	+		MMJJ_RS06235	0.15	-0.1
1,156,102	-		MMJJ_RS06235	0.19	+0.7
1,156,103	+		MMJJ_RS06235	0.19	+0.9
1,156,113	+		MMJJ_RS06235	0.19	-0.0
1,156,147	+		MMJJ_RS06235	0.21	+0.2
1,156,170	-		MMJJ_RS06235	0.22	+1.0
1,156,170	-		MMJJ_RS06235	0.22	+0.5
1,156,171	+		MMJJ_RS06235	0.22	+0.9
1,156,181	-		MMJJ_RS06235	0.23	+1.2
1,156,182	+		MMJJ_RS06235	0.23	-0.1
1,156,216	+		MMJJ_RS06235	0.25	+1.6
1,156,262	+		MMJJ_RS06235	0.27	+0.4
1,156,430	-		MMJJ_RS06235	0.36	+0.9
1,156,431	+		MMJJ_RS06235	0.36	+1.5
1,156,431	+		MMJJ_RS06235	0.36	+0.5
1,156,434	-		MMJJ_RS06235	0.36	+1.3
1,156,435	+		MMJJ_RS06235	0.36	+0.7
1,156,461	-		MMJJ_RS06235	0.37	+1.3
1,156,635	+		MMJJ_RS06235	0.47	+0.8
1,156,701	-		MMJJ_RS06235	0.50	+0.8
1,156,828	+		MMJJ_RS06235	0.57	+1.9
1,156,830	-		MMJJ_RS06235	0.57	-1.3
1,156,841	+		MMJJ_RS06235	0.57	-0.9
1,156,877	+		MMJJ_RS06235	0.59	+0.1
1,156,914	-		MMJJ_RS06235	0.61	+0.7
1,156,949	-		MMJJ_RS06235	0.63	+0.7
1,156,949	-		MMJJ_RS06235	0.63	+1.6
1,156,956	-		MMJJ_RS06235	0.63	+0.5
1,156,959	-		MMJJ_RS06235	0.64	+0.2
1,156,959	-		MMJJ_RS06235	0.64	-0.3
1,156,959	-		MMJJ_RS06235	0.64	-0.7
1,156,960	+		MMJJ_RS06235	0.64	+1.8
1,156,960	+		MMJJ_RS06235	0.64	+1.1
1,156,960	+		MMJJ_RS06235	0.64	+2.0
1,156,960	+		MMJJ_RS06235	0.64	+1.4
1,156,960	+		MMJJ_RS06235	0.64	+0.5
1,156,965	+		MMJJ_RS06235	0.64	+0.9
1,157,026	+		MMJJ_RS06235	0.67	+1.2
1,157,032	+		MMJJ_RS06235	0.67	-0.4
1,157,085	-		MMJJ_RS06235	0.70	+0.0
1,157,086	+		MMJJ_RS06235	0.70	+0.9
1,157,148	-		MMJJ_RS06235	0.74	-1.1
1,157,186	-		MMJJ_RS06235	0.75	+0.5
1,157,190	-		MMJJ_RS06235	0.76	+2.1
1,157,191	+		MMJJ_RS06235	0.76	+0.2
1,157,250	-		MMJJ_RS06235	0.79	+0.6
1,157,261	-		MMJJ_RS06235	0.79	+0.8
1,157,267	-		MMJJ_RS06235	0.80	+0.4
1,157,268	+		MMJJ_RS06235	0.80	+1.4
1,157,268	+		MMJJ_RS06235	0.80	-0.6
1,157,278	+		MMJJ_RS06235	0.80	+0.7
1,157,282	+		MMJJ_RS06235	0.81	+1.2
1,157,282	+		MMJJ_RS06235	0.81	+1.5
1,157,295	-		MMJJ_RS06235	0.81	+1.8
1,157,295	-		MMJJ_RS06235	0.81	-0.1
1,157,341	+		MMJJ_RS06235	0.84	-0.6
1,157,364	-		MMJJ_RS06235	0.85	-1.0
1,157,365	+		MMJJ_RS06235	0.85	+0.3
1,157,365	+		MMJJ_RS06235	0.85	+0.9
1,157,365	+		MMJJ_RS06235	0.85	+0.6
1,157,374	+		MMJJ_RS06235	0.85	+1.2
1,157,464	-				+0.9
1,157,465	+				+0.6
1,157,469	-				+0.4
1,157,469	-				+0.5
1,157,469	-				+1.0
1,157,469	-				+0.8
1,157,469	-				+0.2
1,157,470	+				+0.6
1,157,470	+				+1.7
1,157,470	+				+0.4
1,157,470	+				+0.7
1,157,470	+				+0.4
1,157,474	-				+2.2
1,157,474	-				-0.7
1,157,475	+				-0.5
1,157,475	+				+0.9
1,157,475	+				+1.2
1,157,475	+				-0.0
1,157,476	-				-0.7
1,157,476	-				-1.2
1,157,477	+				+1.1
1,157,477	+				+0.9
1,157,574	+				+0.4
1,157,666	-				+0.9
1,157,667	+				+2.0
1,157,669	-				+1.4
1,157,669	-				-0.9
1,157,669	-				+1.0
1,157,669	-				+1.4
1,157,670	+				-0.2
1,157,670	+				+1.3
1,157,670	+				+0.4
1,157,670	+				+2.9
1,157,673	-				+1.8
1,157,673	-				+1.5
1,157,676	-				+1.4
1,157,676	-				+0.6
1,157,676	-				+0.8
1,157,677	+				+0.6
1,157,677	+				+0.9
1,157,682	-				+0.2
1,157,682	-				+0.4
1,157,682	-				+0.3
1,157,682	-				+1.0
1,157,682	-				+0.4
1,157,682	-				-1.5
1,157,682	-				+0.6
1,157,682	-				+1.1
1,157,683	+				+1.3
1,157,683	+				+0.0
1,157,683	+				+0.4
1,157,683	+				-0.4
1,157,683	+				+1.2
1,157,683	+				+0.8
1,157,683	+				+1.2
1,157,684	-				-1.1
1,157,684	-				+1.6
1,157,684	-				+1.3
1,157,684	-				-1.4
1,157,684	-				+0.2
1,157,684	-				-0.3
1,157,684	-				+0.2
1,157,684	-				+0.5
1,157,684	-				+0.8
1,157,685	+				-0.2
1,157,685	+				+0.4
1,157,685	+				+1.4
1,157,685	+				+0.1
1,157,685	+				+0.7
1,157,685	+				-0.6
1,157,685	+				+0.3
1,157,685	+				-0.5
1,157,685	+				-0.1
1,157,685	+				+1.2
1,157,685	+				+1.4
1,157,685	+				+0.0
1,157,685	+				+0.5
1,157,685	+				+0.8
1,157,685	+				+0.3
1,157,685	+				+1.3
1,157,685	+				+0.4
1,157,685	+				+1.1
1,157,685	+				+1.2
1,157,688	-				+0.4
1,157,688	-				-1.5
1,157,688	-				+0.2
1,157,689	+				+1.5
1,157,689	+				+1.0
1,157,689	+				+0.6
1,157,689	+				+0.0
1,157,689	+				-1.9
1,157,689	+				+0.3
1,157,689	+				+1.0
1,157,689	+				-1.2
1,157,689	+				+1.6
1,157,689	+				+0.8
1,157,695	+				+1.3
1,157,708	+				+0.0
1,157,708	+				+0.8
1,157,726	-				-0.5
1,157,726	-				+0.4
1,157,726	-				+0.0
1,157,808	-				-0.8
1,157,984	-		MMJJ_RS06240	0.13	-3.0
1,157,984	-		MMJJ_RS06240	0.13	-1.2