Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS05970

Experiment: Iron excess (2.5x) , H2 media

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Iron excess (2.5x) , H2 media
1,110,438	+		MMJJ_RS05965	0.34	-0.1
1,110,452	-		MMJJ_RS05965	0.35	+1.8
1,110,453	+		MMJJ_RS05965	0.35	-0.7
1,110,531	-		MMJJ_RS05965	0.41	+0.2
1,110,531	-		MMJJ_RS05965	0.41	-0.3
1,110,531	-		MMJJ_RS05965	0.41	-0.4
1,110,532	+		MMJJ_RS05965	0.41	+0.6
1,110,543	-		MMJJ_RS05965	0.41	+1.3
1,110,548	-		MMJJ_RS05965	0.42	-0.8
1,110,628	-		MMJJ_RS05965	0.48	+0.7
1,110,629	+		MMJJ_RS05965	0.48	+0.2
1,110,644	+		MMJJ_RS05965	0.49	-0.3
1,110,647	-		MMJJ_RS05965	0.49	+0.8
1,110,648	+		MMJJ_RS05965	0.49	+0.7
1,110,648	+		MMJJ_RS05965	0.49	+2.2
1,110,648	+		MMJJ_RS05965	0.49	-0.0
1,110,649	-		MMJJ_RS05965	0.49	+0.8
1,110,650	+		MMJJ_RS05965	0.49	-0.2
1,110,650	+		MMJJ_RS05965	0.49	-1.7
1,110,703	-		MMJJ_RS05965	0.53	-0.7
1,110,717	+		MMJJ_RS05965	0.54	+0.7
1,110,725	-		MMJJ_RS05965	0.55	-1.6
1,110,741	-		MMJJ_RS05965	0.56	+1.3
1,110,742	+		MMJJ_RS05965	0.56	-0.3
1,110,822	-		MMJJ_RS05965	0.62	-0.6
1,110,822	-		MMJJ_RS05965	0.62	-2.0
1,110,822	-		MMJJ_RS05965	0.62	-0.4
1,110,823	+		MMJJ_RS05965	0.62	+0.6
1,110,823	+		MMJJ_RS05965	0.62	+0.5
1,110,823	+		MMJJ_RS05965	0.62	+2.3
1,110,823	+		MMJJ_RS05965	0.62	+1.3
1,110,823	+		MMJJ_RS05965	0.62	-1.8
1,110,827	-		MMJJ_RS05965	0.62	+0.1
1,110,857	-		MMJJ_RS05965	0.64	-0.6
1,110,858	+		MMJJ_RS05965	0.64	+1.3
1,110,858	+		MMJJ_RS05965	0.64	+0.8
1,110,859	-		MMJJ_RS05965	0.64	-0.5
1,110,860	+		MMJJ_RS05965	0.65	-0.8
1,110,877	+		MMJJ_RS05965	0.66	+1.0
1,110,914	+		MMJJ_RS05965	0.68	+0.0
1,110,914	+		MMJJ_RS05965	0.68	+0.2
1,110,924	-		MMJJ_RS05965	0.69	-0.5
1,110,924	-		MMJJ_RS05965	0.69	+0.2
1,110,925	+		MMJJ_RS05965	0.69	+0.3
1,110,925	+		MMJJ_RS05965	0.69	-0.4
1,110,925	+		MMJJ_RS05965	0.69	-0.7
1,110,940	-		MMJJ_RS05965	0.70	-1.0
1,110,940	-		MMJJ_RS05965	0.70	+1.7
1,110,976	+		MMJJ_RS05965	0.73	-1.2
1,110,986	-		MMJJ_RS05965	0.74	+0.5
1,110,990	+		MMJJ_RS05965	0.74	-1.6
1,111,011	+		MMJJ_RS05965	0.76	+0.4
1,111,011	+		MMJJ_RS05965	0.76	+0.1
1,111,021	-		MMJJ_RS05965	0.76	-1.8
1,111,025	-		MMJJ_RS05965	0.77	-0.6
1,111,025	-		MMJJ_RS05965	0.77	+1.2
1,111,037	-		MMJJ_RS05965	0.77	+2.2
1,111,038	+		MMJJ_RS05965	0.78	-0.8
1,111,047	+		MMJJ_RS05965	0.78	-2.2
1,111,094	-		MMJJ_RS05965	0.82	+1.2
1,111,141	-		MMJJ_RS05965	0.85	-1.2
1,111,141	-		MMJJ_RS05965	0.85	+1.1
1,111,144	-		MMJJ_RS05965	0.85	+0.5
1,111,145	+		MMJJ_RS05965	0.85	+0.0
1,111,170	+		MMJJ_RS05965	0.87	-2.2
1,111,190	-		MMJJ_RS05965	0.89	+0.3
1,111,190	-		MMJJ_RS05965	0.89	+0.1
1,111,203	+		MMJJ_RS05965	0.90	+0.6
1,111,214	-				+1.0
1,111,214	-				+0.7
1,111,250	+				-0.3
1,111,359	-				-0.6
1,111,359	-				+2.1
1,111,360	+				-1.6
1,111,360	+				-0.3
1,111,360	+				+1.0
1,111,361	-				+0.5
1,111,361	-				-1.9
1,111,361	-				+0.3
1,111,361	-				+0.3
1,111,361	-				-1.1
1,111,361	-				-0.4
1,111,361	-				-0.0
1,111,361	-				+0.5
1,111,362	+				+1.1
1,111,362	+				-1.0
1,111,362	+				-0.7
1,111,362	+				-0.2
1,111,362	+				-0.1
1,111,362	+				-1.2
1,111,362	+				+0.2
1,111,362	+				+0.7
1,111,363	-				-0.5
1,111,363	-				+0.0
1,111,364	+				+1.9
1,111,364	+				+0.6
1,111,364	+				+0.5
1,111,364	+				+0.7
1,111,371	-				+0.3
1,111,371	-				+0.4
1,111,377	-				-2.2
1,111,385	+				+1.2
1,111,388	-				+1.3
1,111,388	-				+0.2
1,111,419	-				+0.2
1,111,436	-				+0.5
1,111,436	-				+0.3
1,111,437	+				+1.1
1,111,437	+				+2.3
1,111,440	-				+1.2
1,111,440	-				+0.1
1,111,440	-				-1.1
1,111,440	-				-0.7
1,111,441	+				-0.1
1,111,441	+				-1.4
1,111,441	+				-0.7
1,111,441	+				+1.2
1,111,441	+				-1.0
1,111,441	+				+0.5
1,111,441	+				-1.3
1,111,481	-		MMJJ_RS05970	0.25	+0.8
1,111,524	+		MMJJ_RS05970	0.43	+0.6
1,111,524	+		MMJJ_RS05970	0.43	+0.9
1,111,527	-		MMJJ_RS05970	0.44	+0.7
1,111,527	-		MMJJ_RS05970	0.44	+1.5
1,111,528	+		MMJJ_RS05970	0.44	+0.9
1,111,640	-				+0.3
1,111,687	-				+0.9
1,111,688	+				-1.0
1,111,741	+				-0.3
1,111,764	-				+1.5
1,111,772	+				+0.3
1,111,780	-				+0.0
1,111,790	+				-0.3
1,111,796	+				-0.7
1,111,928	-		MMJJ_RS05975	0.19	+0.9
1,111,982	-		MMJJ_RS05975	0.25	+0.0
1,112,111	-		MMJJ_RS05975	0.41	+0.3
1,112,112	+		MMJJ_RS05975	0.41	+0.5
1,112,143	-		MMJJ_RS05975	0.45	+0.5
1,112,143	-		MMJJ_RS05975	0.45	-0.2
1,112,143	-		MMJJ_RS05975	0.45	-0.0
1,112,144	+		MMJJ_RS05975	0.45	+0.3
1,112,144	+		MMJJ_RS05975	0.45	+0.8
1,112,144	+		MMJJ_RS05975	0.45	-1.0
1,112,176	+		MMJJ_RS05975	0.49	+0.9
1,112,189	-		MMJJ_RS05975	0.51	-0.7
1,112,243	+		MMJJ_RS05975	0.57	-0.2
1,112,243	+		MMJJ_RS05975	0.57	-0.3
1,112,243	+		MMJJ_RS05975	0.57	+1.8
1,112,246	-		MMJJ_RS05975	0.58	-1.0
1,112,246	-		MMJJ_RS05975	0.58	+0.8
1,112,246	-		MMJJ_RS05975	0.58	+1.6
1,112,247	+		MMJJ_RS05975	0.58	+0.2
1,112,247	+		MMJJ_RS05975	0.58	+0.1
1,112,247	+		MMJJ_RS05975	0.58	-1.1
1,112,286	-		MMJJ_RS05975	0.62	-1.0
1,112,287	+		MMJJ_RS05975	0.63	+0.3
1,112,340	+		MMJJ_RS05975	0.69	-1.2
1,112,395	-		MMJJ_RS05975	0.76	+0.4
1,112,396	+		MMJJ_RS05975	0.76	+0.3
1,112,468	+		MMJJ_RS05975	0.85	+0.9
1,112,502	+		MMJJ_RS05975	0.89	-0.0
1,112,587	-				-0.9
1,112,589	-				+1.0
1,112,589	-				+2.0
1,112,590	+				+0.1
1,112,593	-				+0.3
1,112,604	-				+1.2
1,112,605	+				-0.4
1,112,618	-				+1.6
1,112,619	+				-0.6
1,112,619	+				+1.4
1,112,628	+				+0.8