Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS05600

Experiment: Iron excess (2.5x) , H2 media

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Iron excess (2.5x) , H2 media
1,043,818	+				-1.6
1,043,898	-		MMJJ_RS05595	0.12	-2.5
1,043,924	-		MMJJ_RS05595	0.17	-0.4
1,043,924	-		MMJJ_RS05595	0.17	-2.4
1,044,139	-		MMJJ_RS05595	0.62	-2.1
1,044,140	+				-0.1
1,044,238	-		MMJJ_RS05595	0.82	-4.1
1,044,258	+		MMJJ_RS05595	0.87	-2.9
1,044,305	-				-1.1
1,044,349	-				-1.4
1,044,354	-				-3.5
1,044,354	-				+0.4
1,044,354	-				+0.2
1,044,354	-				-4.0
1,044,355	+				-3.2
1,044,355	+				+2.7
1,044,355	+				-3.1
1,044,355	+				-2.2
1,044,355	+				-2.9
1,044,355	+				-2.4
1,044,358	-				-2.7
1,044,359	+				-2.1
1,044,359	+				-0.9
1,044,362	+				-0.4
1,044,367	-				+2.2
1,044,378	-				-0.2
1,044,378	-				-1.3
1,044,378	-				-3.8
1,044,378	-				-2.5
1,044,389	-				-0.5
1,044,389	-				-1.8
1,044,390	+				-1.9
1,044,391	-				-1.6
1,044,392	+				-2.1
1,044,395	-				+1.1
1,044,451	+				+1.6
1,044,495	+				+0.4
1,044,541	+				+0.5
1,044,604	-				-0.3
1,044,605	+				+1.2
1,044,605	+				+3.2
1,044,698	+		MMJJ_RS05600	0.13	+0.8
1,044,698	+		MMJJ_RS05600	0.13	-0.9
1,044,700	-		MMJJ_RS05600	0.13	-0.6
1,044,701	+		MMJJ_RS05600	0.13	+0.0
1,044,781	-		MMJJ_RS05600	0.18	-0.3
1,044,781	-		MMJJ_RS05600	0.18	+0.1
1,044,788	-		MMJJ_RS05600	0.18	+2.4
1,044,789	+		MMJJ_RS05600	0.18	+0.7
1,044,810	-		MMJJ_RS05600	0.20	+0.6
1,044,847	-		MMJJ_RS05600	0.22	+1.3
1,044,847	-		MMJJ_RS05600	0.22	+2.2
1,044,847	-		MMJJ_RS05600	0.22	-0.4
1,044,848	+		MMJJ_RS05600	0.22	-1.1
1,044,866	-		MMJJ_RS05600	0.23	+0.9
1,044,871	-		MMJJ_RS05600	0.24	-0.3
1,044,886	-		MMJJ_RS05600	0.25	+1.2
1,044,908	+		MMJJ_RS05600	0.26	-0.4
1,044,918	-		MMJJ_RS05600	0.27	+0.5
1,044,918	-		MMJJ_RS05600	0.27	-0.0
1,044,919	+		MMJJ_RS05600	0.27	-0.6
1,044,919	+		MMJJ_RS05600	0.27	+0.4
1,044,922	-				-0.8
1,045,045	-		MMJJ_RS05600	0.34	+1.1
1,045,046	+		MMJJ_RS05600	0.35	+0.7
1,045,049	-		MMJJ_RS05600	0.35	+0.4
1,045,050	+		MMJJ_RS05600	0.35	+0.9
1,045,050	+		MMJJ_RS05600	0.35	-0.4
1,045,050	+		MMJJ_RS05600	0.35	-0.2
1,045,081	+		MMJJ_RS05600	0.37	+0.7
1,045,081	+		MMJJ_RS05600	0.37	-1.8
1,045,082	-		MMJJ_RS05600	0.37	+0.6
1,045,082	-		MMJJ_RS05600	0.37	+0.0
1,045,082	-		MMJJ_RS05600	0.37	+0.1
1,045,083	+		MMJJ_RS05600	0.37	+1.0
1,045,083	+		MMJJ_RS05600	0.37	+2.6
1,045,085	+		MMJJ_RS05600	0.37	-0.8
1,045,095	-		MMJJ_RS05600	0.38	-0.7
1,045,096	+		MMJJ_RS05600	0.38	+3.4
1,045,192	-		MMJJ_RS05600	0.44	-0.8
1,045,199	-		MMJJ_RS05600	0.44	+0.9
1,045,199	-		MMJJ_RS05600	0.44	+0.2
1,045,199	-		MMJJ_RS05600	0.44	-0.7
1,045,199	-		MMJJ_RS05600	0.44	+0.1
1,045,200	+		MMJJ_RS05600	0.44	-0.2
1,045,200	+		MMJJ_RS05600	0.44	+1.1
1,045,207	+		MMJJ_RS05600	0.45	-0.2
1,045,293	-		MMJJ_RS05600	0.50	-0.8
1,045,293	-		MMJJ_RS05600	0.50	+0.4
1,045,429	-		MMJJ_RS05600	0.58	+1.0
1,045,440	-		MMJJ_RS05600	0.59	+2.2
1,045,440	-		MMJJ_RS05600	0.59	-0.7
1,045,440	-		MMJJ_RS05600	0.59	+0.9
1,045,440	-		MMJJ_RS05600	0.59	+0.4
1,045,441	+		MMJJ_RS05600	0.59	+0.6
1,045,441	+		MMJJ_RS05600	0.59	-3.2
1,045,441	+		MMJJ_RS05600	0.59	+0.2
1,045,468	+		MMJJ_RS05600	0.61	+0.3
1,045,487	-		MMJJ_RS05600	0.62	+0.5
1,045,488	+		MMJJ_RS05600	0.62	+1.1
1,045,488	+		MMJJ_RS05600	0.62	-0.1
1,045,488	+		MMJJ_RS05600	0.62	-0.1
1,045,488	+		MMJJ_RS05600	0.62	-0.2
1,045,488	+		MMJJ_RS05600	0.62	+0.2
1,045,496	-		MMJJ_RS05600	0.63	-1.0
1,045,496	-		MMJJ_RS05600	0.63	-0.9
1,045,524	-		MMJJ_RS05600	0.64	-1.8
1,045,525	+		MMJJ_RS05600	0.64	+1.5
1,045,525	+		MMJJ_RS05600	0.64	+0.9
1,045,550	-		MMJJ_RS05600	0.66	-0.3
1,045,554	-		MMJJ_RS05600	0.66	+0.4
1,045,554	-		MMJJ_RS05600	0.66	-0.3
1,045,555	+		MMJJ_RS05600	0.66	-0.0
1,045,583	-		MMJJ_RS05600	0.68	-0.9
1,045,584	+		MMJJ_RS05600	0.68	+1.5
1,045,584	+		MMJJ_RS05600	0.68	+0.5
1,045,585	-		MMJJ_RS05600	0.68	-0.2
1,045,585	-		MMJJ_RS05600	0.68	-0.1
1,045,585	-		MMJJ_RS05600	0.68	+0.9
1,045,597	-		MMJJ_RS05600	0.69	+0.3
1,045,636	+		MMJJ_RS05600	0.71	+0.3
1,045,641	-		MMJJ_RS05600	0.72	+0.9
1,045,641	-		MMJJ_RS05600	0.72	-0.0
1,045,641	-		MMJJ_RS05600	0.72	+1.0
1,045,648	-		MMJJ_RS05600	0.72	+1.0
1,045,686	+		MMJJ_RS05600	0.74	+1.0
1,045,729	-		MMJJ_RS05600	0.77	-2.1
1,045,759	-		MMJJ_RS05600	0.79	+1.2
1,045,784	+		MMJJ_RS05600	0.81	+0.3
1,045,784	+		MMJJ_RS05600	0.81	+0.6
1,045,788	-		MMJJ_RS05600	0.81	+2.0
1,045,803	-		MMJJ_RS05600	0.82	+1.3
1,045,803	-		MMJJ_RS05600	0.82	-0.8
1,045,831	-		MMJJ_RS05600	0.84	+0.6
1,045,831	-		MMJJ_RS05600	0.84	+2.3
1,045,832	+		MMJJ_RS05600	0.84	+0.3
1,045,832	+		MMJJ_RS05600	0.84	-0.3
1,045,833	-		MMJJ_RS05600	0.84	+0.3
1,045,834	+		MMJJ_RS05600	0.84	+0.7
1,045,839	-		MMJJ_RS05600	0.84	+1.0
1,045,843	-		MMJJ_RS05600	0.84	-1.2
1,045,933	+		MMJJ_RS05600	0.90	+0.2
1,045,939	+				+0.7
1,045,939	+				-0.5
1,045,995	+				+0.3
1,045,995	+				-0.6
1,045,995	+				+0.2
1,045,995	+				-0.6
1,046,031	+				+1.3
1,046,040	+				+0.7
1,046,046	-				+0.4
1,046,050	-				+1.3
1,046,057	-				-0.4
1,046,057	-				-0.9
1,046,057	-				+0.3
1,046,057	-				+0.1
1,046,057	-				-0.6
1,046,058	+				+0.3
1,046,058	+				-0.1
1,046,058	+				+0.1
1,046,059	-				+0.4
1,046,062	-				-0.7
1,046,097	+				+1.3
1,046,212	-		MMJJ_RS05605	0.61	-2.7
1,046,213	+		MMJJ_RS05605	0.61	+0.3
1,046,215	+		MMJJ_RS05605	0.62	-0.1
1,046,229	-		MMJJ_RS05605	0.70	-0.8
1,046,229	-		MMJJ_RS05605	0.70	+0.7
1,046,229	-		MMJJ_RS05605	0.70	-0.7
1,046,233	-		MMJJ_RS05605	0.72	-0.8
1,046,233	-		MMJJ_RS05605	0.72	+0.5
1,046,234	+		MMJJ_RS05605	0.72	+0.5
1,046,258	+		MMJJ_RS05605	0.85	+0.7
1,046,261	+		MMJJ_RS05605	0.86	+0.8
1,046,264	-		MMJJ_RS05605	0.88	-0.6
1,046,265	+		MMJJ_RS05605	0.89	-0.1
1,046,265	+		MMJJ_RS05605	0.89	+1.0
1,046,314	-				-0.5
1,046,317	-				+1.9
1,046,318	+				-1.8
1,046,318	+				+0.5
1,046,318	+				+0.1
1,046,324	-				-0.7
1,046,324	-				+1.2
1,046,324	-				+1.2
1,046,325	+				+0.9
1,046,325	+				-1.5
1,046,332	-				+0.2
1,046,332	-				-0.4
1,046,333	+				+1.2
1,046,335	-				+1.2
1,046,335	-				-0.2
1,046,336	+				+0.8
1,046,336	+				+0.3
1,046,336	+				+0.4
1,046,337	-				-0.2
1,046,337	-				-0.7
1,046,338	+				-0.9
1,046,346	+				+1.0
1,046,363	-				+0.4
1,046,363	-				+1.3
1,046,363	-				+1.3
1,046,363	-				+1.0
1,046,364	+				+0.6
1,046,364	+				+3.1
1,046,366	+				+0.0
1,046,375	+				+0.3
1,046,436	-				+0.4
1,046,436	-				-2.4
1,046,468	-				+0.5
1,046,469	+				+0.7
1,046,477	+				+0.9
1,046,523	+				-0.0
1,046,562	+				-0.7
1,046,564	-				+1.2
1,046,564	-				+1.2
1,046,564	-				+0.9
1,046,565	+				+0.8
1,046,565	+				+1.1
1,046,566	-				+0.5
1,046,566	-				+1.1
1,046,566	-				+0.3
1,046,567	+				+0.3
1,046,567	+				-0.1
1,046,568	-				+0.2
1,046,569	+				+0.1
1,046,569	+				-1.0
1,046,570	-				+0.9
1,046,570	-				-0.8
1,046,570	-				+0.2
1,046,571	+				+1.5
1,046,571	+				-0.6
1,046,695	+		MMJJ_RS05610	0.15	-2.0
1,046,701	+		MMJJ_RS05610	0.16	-2.2
1,046,701	+		MMJJ_RS05610	0.16	-1.8
1,046,706	+		MMJJ_RS05610	0.17	-2.2
1,046,837	-		MMJJ_RS05610	0.41	-1.6
1,046,880	+		MMJJ_RS05610	0.49	-2.6
1,046,882	-		MMJJ_RS05610	0.50	-2.0
1,046,926	-		MMJJ_RS05610	0.58	-1.8
1,046,931	-		MMJJ_RS05610	0.59	-2.1
1,046,931	-				-0.4
1,046,932	+		MMJJ_RS05610	0.59	-0.8
1,046,932	+		MMJJ_RS05610	0.59	-1.4
1,046,933	-		MMJJ_RS05610	0.59	-0.8
1,046,934	+		MMJJ_RS05610	0.59	-2.9
1,047,077	-		MMJJ_RS05610	0.86	-3.0
1,047,077	-				-1.1