Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS04270

Experiment: Iron excess (2.5x) , H2 media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS04260 and MMJJ_RS04265 are separated by 26 nucleotidesMMJJ_RS04265 and MMJJ_RS04270 are separated by 17 nucleotidesMMJJ_RS04270 and MMJJ_RS04275 are separated by 29 nucleotidesMMJJ_RS04275 and MMJJ_RS04280 overlap by 1 nucleotides MMJJ_RS04260: MMJJ_RS04260 - molybdopterin molybdotransferase MoeA, at 793,458 to 794,585 _RS04260 MMJJ_RS04265: MMJJ_RS04265 - FmdE family protein, at 794,612 to 795,196 _RS04265 MMJJ_RS04270: MMJJ_RS04270 - DUF364 domain-containing protein, at 795,214 to 795,990 _RS04270 MMJJ_RS04275: MMJJ_RS04275 - ABC transporter ATP-binding protein, at 796,020 to 796,802 _RS04275 MMJJ_RS04280: MMJJ_RS04280 - iron ABC transporter permease, at 796,802 to 797,680 _RS04280 Position (kb) 795 796Strain fitness (log2 ratio) -2 -1 0 1 2at 794.259 kb on - strand, within MMJJ_RS04260at 794.417 kb on - strand, within MMJJ_RS04260at 794.418 kb on + strand, within MMJJ_RS04260at 794.429 kb on + strand, within MMJJ_RS04260at 794.476 kb on - strandat 794.537 kb on - strandat 794.538 kb on + strandat 794.553 kb on - strandat 794.591 kb on - strandat 794.591 kb on - strandat 794.591 kb on - strandat 794.591 kb on - strandat 794.592 kb on + strandat 794.592 kb on + strandat 794.647 kb on - strandat 794.648 kb on + strandat 794.700 kb on + strand, within MMJJ_RS04265at 794.757 kb on - strand, within MMJJ_RS04265at 794.761 kb on - strand, within MMJJ_RS04265at 794.762 kb on + strand, within MMJJ_RS04265at 794.762 kb on + strand, within MMJJ_RS04265at 794.819 kb on + strand, within MMJJ_RS04265at 794.835 kb on - strand, within MMJJ_RS04265at 794.863 kb on - strand, within MMJJ_RS04265at 794.890 kb on - strand, within MMJJ_RS04265at 794.978 kb on + strand, within MMJJ_RS04265at 795.019 kb on - strand, within MMJJ_RS04265at 795.020 kb on + strand, within MMJJ_RS04265at 795.056 kb on - strand, within MMJJ_RS04265at 795.056 kb on - strand, within MMJJ_RS04265at 795.057 kb on + strand, within MMJJ_RS04265at 795.057 kb on + strand, within MMJJ_RS04265at 795.057 kb on + strand, within MMJJ_RS04265at 795.057 kb on + strand, within MMJJ_RS04265at 795.057 kb on + strand, within MMJJ_RS04265at 795.057 kb on + strand, within MMJJ_RS04265at 795.057 kb on + strand, within MMJJ_RS04265at 795.058 kb on - strand, within MMJJ_RS04265at 795.058 kb on - strand, within MMJJ_RS04265at 795.085 kb on + strand, within MMJJ_RS04265at 795.085 kb on + strand, within MMJJ_RS04265at 795.147 kb on + strandat 795.185 kb on - strandat 795.185 kb on - strandat 795.185 kb on - strandat 795.185 kb on - strandat 795.185 kb on - strandat 795.185 kb on - strandat 795.186 kb on + strandat 795.186 kb on + strandat 795.186 kb on + strandat 795.211 kb on + strandat 795.216 kb on + strandat 795.225 kb on - strandat 795.225 kb on - strandat 795.226 kb on + strandat 795.226 kb on + strandat 795.231 kb on - strandat 795.232 kb on + strandat 795.316 kb on + strand, within MMJJ_RS04270at 795.316 kb on + strand, within MMJJ_RS04270at 795.320 kb on + strand, within MMJJ_RS04270at 795.323 kb on + strand, within MMJJ_RS04270at 795.706 kb on - strand, within MMJJ_RS04270at 795.711 kb on + strand, within MMJJ_RS04270at 795.784 kb on - strand, within MMJJ_RS04270at 795.784 kb on - strand, within MMJJ_RS04270at 795.784 kb on - strand, within MMJJ_RS04270at 795.784 kb on - strand, within MMJJ_RS04270at 795.785 kb on + strand, within MMJJ_RS04270at 795.900 kb on + strand, within MMJJ_RS04270at 795.936 kb on - strandat 795.993 kb on - strandat 796.005 kb on + strandat 796.015 kb on + strandat 796.036 kb on + strandat 796.074 kb on - strandat 796.074 kb on - strandat 796.075 kb on + strandat 796.075 kb on + strandat 796.091 kb on - strandat 796.096 kb on + strandat 796.183 kb on + strand, within MMJJ_RS04275at 796.399 kb on + strand, within MMJJ_RS04275at 796.494 kb on + strand, within MMJJ_RS04275at 796.537 kb on - strand, within MMJJ_RS04275at 796.597 kb on - strand, within MMJJ_RS04275at 796.635 kb on + strand, within MMJJ_RS04275at 796.675 kb on + strand, within MMJJ_RS04275at 796.710 kb on - strand, within MMJJ_RS04275at 796.711 kb on + strand, within MMJJ_RS04275at 796.711 kb on + strand, within MMJJ_RS04275at 796.712 kb on - strand, within MMJJ_RS04275at 796.713 kb on + strand, within MMJJ_RS04275at 796.713 kb on + strand, within MMJJ_RS04275at 796.713 kb on + strand, within MMJJ_RS04275at 796.713 kb on + strand, within MMJJ_RS04275at 796.743 kb on + strandat 796.743 kb on + strandat 796.775 kb on - strandat 796.776 kb on + strandat 796.783 kb on + strandat 796.785 kb on + strandat 796.803 kb on - strandat 796.804 kb on + strandat 796.829 kb on + strandat 796.829 kb on + strandat 796.863 kb on + strandat 796.863 kb on + strandat 796.867 kb on - strandat 796.868 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Iron excess (2.5x) , H2 media
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794,259 - MMJJ_RS04260 0.71 -0.2
794,417 - MMJJ_RS04260 0.85 +0.7
794,418 + MMJJ_RS04260 0.85 +0.2
794,429 + MMJJ_RS04260 0.86 +0.6
794,476 - +2.5
794,537 - -0.9
794,538 + +1.0
794,553 - -1.5
794,591 - +0.3
794,591 - +0.4
794,591 - -0.7
794,591 - +0.5
794,592 + +0.7
794,592 + +1.0
794,647 - +1.2
794,648 + +0.3
794,700 + MMJJ_RS04265 0.15 +1.2
794,757 - MMJJ_RS04265 0.25 -0.4
794,761 - MMJJ_RS04265 0.25 -0.5
794,762 + MMJJ_RS04265 0.26 -0.6
794,762 + MMJJ_RS04265 0.26 +0.3
794,819 + MMJJ_RS04265 0.35 -1.1
794,835 - MMJJ_RS04265 0.38 -1.9
794,863 - MMJJ_RS04265 0.43 +1.5
794,890 - MMJJ_RS04265 0.48 +0.6
794,978 + MMJJ_RS04265 0.63 +0.1
795,019 - MMJJ_RS04265 0.70 +0.5
795,020 + MMJJ_RS04265 0.70 +0.0
795,056 - MMJJ_RS04265 0.76 -1.4
795,056 - MMJJ_RS04265 0.76 +1.4
795,057 + MMJJ_RS04265 0.76 -1.7
795,057 + MMJJ_RS04265 0.76 -0.8
795,057 + MMJJ_RS04265 0.76 +0.2
795,057 + MMJJ_RS04265 0.76 -1.1
795,057 + MMJJ_RS04265 0.76 +1.1
795,057 + MMJJ_RS04265 0.76 +1.3
795,057 + MMJJ_RS04265 0.76 -0.2
795,058 - MMJJ_RS04265 0.76 -0.2
795,058 - MMJJ_RS04265 0.76 -0.0
795,085 + MMJJ_RS04265 0.81 -0.7
795,085 + MMJJ_RS04265 0.81 +0.2
795,147 + +1.1
795,185 - -0.1
795,185 - +0.3
795,185 - -0.7
795,185 - +0.3
795,185 - -0.3
795,185 - +0.4
795,186 + -0.1
795,186 + -1.6
795,186 + -0.0
795,211 + -0.2
795,216 + +0.2
795,225 - +1.3
795,225 - +0.8
795,226 + +0.4
795,226 + -0.5
795,231 - +0.8
795,232 + -1.7
795,316 + MMJJ_RS04270 0.13 +0.9
795,316 + MMJJ_RS04270 0.13 +0.0
795,320 + MMJJ_RS04270 0.14 +0.3
795,323 + MMJJ_RS04270 0.14 -0.7
795,706 - MMJJ_RS04270 0.63 +0.6
795,711 + MMJJ_RS04270 0.64 +0.2
795,784 - MMJJ_RS04270 0.73 -0.9
795,784 - MMJJ_RS04270 0.73 +0.6
795,784 - MMJJ_RS04270 0.73 +1.1
795,784 - MMJJ_RS04270 0.73 +0.5
795,785 + MMJJ_RS04270 0.73 +2.3
795,900 + MMJJ_RS04270 0.88 +0.0
795,936 - +0.4
795,993 - +0.1
796,005 + +0.1
796,015 + +0.2
796,036 + -0.4
796,074 - +0.3
796,074 - +0.3
796,075 + +0.3
796,075 + -1.7
796,091 - -1.4
796,096 + -2.1
796,183 + MMJJ_RS04275 0.21 -0.2
796,399 + MMJJ_RS04275 0.48 +0.0
796,494 + MMJJ_RS04275 0.61 +0.2
796,537 - MMJJ_RS04275 0.66 +2.1
796,597 - MMJJ_RS04275 0.74 +0.4
796,635 + MMJJ_RS04275 0.79 -0.7
796,675 + MMJJ_RS04275 0.84 +0.8
796,710 - MMJJ_RS04275 0.88 +0.0
796,711 + MMJJ_RS04275 0.88 +0.4
796,711 + MMJJ_RS04275 0.88 -1.1
796,712 - MMJJ_RS04275 0.88 +0.8
796,713 + MMJJ_RS04275 0.89 -1.7
796,713 + MMJJ_RS04275 0.89 -1.4
796,713 + MMJJ_RS04275 0.89 -0.3
796,713 + MMJJ_RS04275 0.89 +1.3
796,743 + +0.6
796,743 + -0.1
796,775 - -0.5
796,776 + +1.1
796,783 + -0.3
796,785 + +1.3
796,803 - -0.5
796,804 + -0.5
796,829 + +1.2
796,829 + +0.6
796,863 + -0.4
796,863 + -2.0
796,867 - +0.5
796,868 + +0.4

Or see this region's nucleotide sequence