Experiment: Iron excess (2.5x) , H2 media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS02220 and MMJJ_RS02225 are separated by 180 nucleotides MMJJ_RS02225 and MMJJ_RS02230 are separated by 254 nucleotides MMJJ_RS02230 and MMJJ_RS02235 are separated by 93 nucleotides
MMJJ_RS02220: MMJJ_RS02220 - 3-isopropylmalate dehydrogenase, at 421,125 to 422,117
_RS02220
MMJJ_RS02225: MMJJ_RS02225 - hypothetical protein, at 422,298 to 422,588
_RS02225
MMJJ_RS02230: MMJJ_RS02230 - hypothetical protein, at 422,843 to 423,454
_RS02230
MMJJ_RS02235: MMJJ_RS02235 - DUF123 domain-containing protein, at 423,548 to 424,618
_RS02235
Position (kb) 422
423 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 422.173 kb on + strand at 422.236 kb on - strand at 422.245 kb on - strand at 422.320 kb on - strand at 422.371 kb on - strand, within MMJJ_RS02225 at 422.401 kb on + strand, within MMJJ_RS02225 at 422.407 kb on + strand, within MMJJ_RS02225 at 422.411 kb on - strand, within MMJJ_RS02225 at 422.412 kb on + strand, within MMJJ_RS02225 at 422.414 kb on + strand, within MMJJ_RS02225 at 422.429 kb on - strand, within MMJJ_RS02225 at 422.468 kb on - strand, within MMJJ_RS02225 at 422.469 kb on + strand, within MMJJ_RS02225 at 422.479 kb on - strand, within MMJJ_RS02225 at 422.479 kb on - strand, within MMJJ_RS02225 at 422.481 kb on - strand, within MMJJ_RS02225 at 422.481 kb on - strand, within MMJJ_RS02225 at 422.482 kb on + strand, within MMJJ_RS02225 at 422.482 kb on + strand, within MMJJ_RS02225 at 422.482 kb on + strand, within MMJJ_RS02225 at 422.483 kb on - strand, within MMJJ_RS02225 at 422.483 kb on - strand, within MMJJ_RS02225 at 422.483 kb on - strand, within MMJJ_RS02225 at 422.483 kb on - strand, within MMJJ_RS02225 at 422.483 kb on - strand, within MMJJ_RS02225 at 422.483 kb on - strand, within MMJJ_RS02225 at 422.484 kb on + strand, within MMJJ_RS02225 at 422.484 kb on + strand, within MMJJ_RS02225 at 422.484 kb on + strand, within MMJJ_RS02225 at 422.520 kb on + strand, within MMJJ_RS02225 at 422.528 kb on - strand, within MMJJ_RS02225 at 422.528 kb on - strand, within MMJJ_RS02225 at 422.532 kb on - strand, within MMJJ_RS02225 at 422.532 kb on - strand, within MMJJ_RS02225 at 422.533 kb on + strand, within MMJJ_RS02225 at 422.535 kb on - strand, within MMJJ_RS02225 at 422.535 kb on - strand, within MMJJ_RS02225 at 422.535 kb on - strand, within MMJJ_RS02225 at 422.535 kb on - strand, within MMJJ_RS02225 at 422.536 kb on + strand, within MMJJ_RS02225 at 422.536 kb on + strand, within MMJJ_RS02225 at 422.536 kb on + strand, within MMJJ_RS02225 at 422.537 kb on - strand, within MMJJ_RS02225 at 422.537 kb on - strand, within MMJJ_RS02225 at 422.537 kb on - strand, within MMJJ_RS02225 at 422.537 kb on - strand, within MMJJ_RS02225 at 422.537 kb on - strand, within MMJJ_RS02225 at 422.537 kb on - strand, within MMJJ_RS02225 at 422.538 kb on + strand, within MMJJ_RS02225 at 422.538 kb on + strand, within MMJJ_RS02225 at 422.538 kb on + strand, within MMJJ_RS02225 at 422.538 kb on + strand, within MMJJ_RS02225 at 422.582 kb on + strand at 422.610 kb on - strand at 422.611 kb on + strand at 422.616 kb on + strand at 422.619 kb on - strand at 422.626 kb on - strand at 422.627 kb on + strand at 422.627 kb on + strand at 422.628 kb on - strand at 422.628 kb on - strand at 422.628 kb on - strand at 422.634 kb on - strand at 422.656 kb on - strand at 422.656 kb on - strand at 422.656 kb on - strand at 422.656 kb on - strand at 422.656 kb on - strand at 422.656 kb on - strand at 422.656 kb on - strand at 422.656 kb on - strand at 422.656 kb on - strand at 422.656 kb on - strand at 422.656 kb on - strand at 422.656 kb on - strand at 422.656 kb on - strand at 422.657 kb on + strand at 422.657 kb on + strand at 422.657 kb on + strand at 422.657 kb on + strand at 422.657 kb on + strand at 422.657 kb on + strand at 422.657 kb on + strand at 422.657 kb on + strand at 422.657 kb on + strand at 422.657 kb on + strand at 422.657 kb on + strand at 422.658 kb on - strand at 422.658 kb on - strand at 422.658 kb on - strand at 422.658 kb on - strand at 422.658 kb on - strand at 422.659 kb on + strand at 422.659 kb on + strand at 422.659 kb on + strand at 422.659 kb on + strand at 422.659 kb on + strand at 422.659 kb on + strand at 422.659 kb on + strand at 422.659 kb on + strand at 422.660 kb on - strand at 422.660 kb on - strand at 422.660 kb on - strand at 422.660 kb on - strand at 422.660 kb on - strand at 422.661 kb on + strand at 422.661 kb on + strand at 422.661 kb on + strand at 422.661 kb on + strand at 422.661 kb on + strand at 422.661 kb on + strand at 422.661 kb on + strand at 422.665 kb on - strand at 422.665 kb on - strand at 422.666 kb on + strand at 422.666 kb on + strand at 422.669 kb on - strand at 422.669 kb on - strand at 422.670 kb on + strand at 422.692 kb on - strand at 422.692 kb on - strand at 422.693 kb on + strand at 422.697 kb on + strand at 422.724 kb on - strand at 422.725 kb on + strand at 422.827 kb on - strand at 422.940 kb on - strand, within MMJJ_RS02230 at 422.940 kb on - strand, within MMJJ_RS02230 at 422.941 kb on + strand, within MMJJ_RS02230 at 422.978 kb on - strand, within MMJJ_RS02230 at 422.978 kb on - strand, within MMJJ_RS02230 at 422.979 kb on + strand, within MMJJ_RS02230 at 422.979 kb on + strand, within MMJJ_RS02230 at 423.051 kb on - strand, within MMJJ_RS02230 at 423.062 kb on - strand, within MMJJ_RS02230 at 423.062 kb on - strand, within MMJJ_RS02230 at 423.063 kb on + strand, within MMJJ_RS02230 at 423.086 kb on - strand, within MMJJ_RS02230 at 423.107 kb on + strand, within MMJJ_RS02230 at 423.107 kb on + strand, within MMJJ_RS02230 at 423.157 kb on - strand, within MMJJ_RS02230 at 423.159 kb on - strand, within MMJJ_RS02230 at 423.190 kb on - strand, within MMJJ_RS02230 at 423.215 kb on - strand, within MMJJ_RS02230 at 423.222 kb on + strand, within MMJJ_RS02230 at 423.250 kb on - strand, within MMJJ_RS02230 at 423.251 kb on + strand, within MMJJ_RS02230 at 423.286 kb on - strand, within MMJJ_RS02230 at 423.287 kb on + strand, within MMJJ_RS02230 at 423.300 kb on + strand, within MMJJ_RS02230 at 423.300 kb on + strand, within MMJJ_RS02230 at 423.306 kb on + strand, within MMJJ_RS02230 at 423.306 kb on + strand, within MMJJ_RS02230 at 423.306 kb on + strand, within MMJJ_RS02230 at 423.311 kb on - strand, within MMJJ_RS02230 at 423.311 kb on - strand, within MMJJ_RS02230 at 423.311 kb on - strand, within MMJJ_RS02230 at 423.311 kb on - strand, within MMJJ_RS02230 at 423.311 kb on - strand, within MMJJ_RS02230 at 423.311 kb on - strand, within MMJJ_RS02230 at 423.311 kb on - strand, within MMJJ_RS02230 at 423.311 kb on - strand, within MMJJ_RS02230 at 423.311 kb on - strand, within MMJJ_RS02230 at 423.311 kb on - strand, within MMJJ_RS02230 at 423.312 kb on + strand, within MMJJ_RS02230 at 423.312 kb on + strand, within MMJJ_RS02230 at 423.312 kb on + strand, within MMJJ_RS02230 at 423.312 kb on + strand, within MMJJ_RS02230 at 423.312 kb on + strand, within MMJJ_RS02230 at 423.312 kb on + strand, within MMJJ_RS02230 at 423.312 kb on + strand, within MMJJ_RS02230 at 423.312 kb on + strand, within MMJJ_RS02230 at 423.312 kb on + strand, within MMJJ_RS02230 at 423.312 kb on + strand, within MMJJ_RS02230 at 423.312 kb on + strand, within MMJJ_RS02230 at 423.312 kb on + strand, within MMJJ_RS02230 at 423.312 kb on + strand, within MMJJ_RS02230 at 423.312 kb on + strand, within MMJJ_RS02230 at 423.312 kb on + strand, within MMJJ_RS02230 at 423.313 kb on - strand, within MMJJ_RS02230 at 423.314 kb on + strand, within MMJJ_RS02230 at 423.325 kb on - strand, within MMJJ_RS02230 at 423.325 kb on - strand, within MMJJ_RS02230 at 423.325 kb on - strand, within MMJJ_RS02230 at 423.328 kb on + strand, within MMJJ_RS02230 at 423.334 kb on - strand, within MMJJ_RS02230 at 423.334 kb on - strand, within MMJJ_RS02230 at 423.334 kb on - strand, within MMJJ_RS02230 at 423.334 kb on - strand, within MMJJ_RS02230 at 423.335 kb on + strand, within MMJJ_RS02230 at 423.335 kb on + strand, within MMJJ_RS02230 at 423.340 kb on + strand, within MMJJ_RS02230 at 423.380 kb on - strand, within MMJJ_RS02230 at 423.381 kb on + strand, within MMJJ_RS02230 at 423.381 kb on + strand, within MMJJ_RS02230 at 423.381 kb on + strand, within MMJJ_RS02230 at 423.418 kb on - strand at 423.418 kb on - strand at 423.440 kb on + strand at 423.442 kb on - strand at 423.506 kb on + strand at 423.509 kb on + strand at 423.511 kb on - strand at 423.511 kb on - strand at 423.512 kb on + strand at 423.520 kb on + strand at 423.522 kb on - strand at 423.524 kb on - strand at 423.524 kb on - strand at 423.525 kb on + strand at 423.526 kb on - strand at 423.526 kb on - strand at 423.527 kb on + strand at 423.527 kb on + strand at 423.575 kb on + strand at 423.587 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Iron excess (2.5x) , H2 media remove 422,173 + +0.1 422,236 - +2.0 422,245 - +0.2 422,320 - -0.6 422,371 - MMJJ_RS02225 0.25 +1.5 422,401 + MMJJ_RS02225 0.35 -0.4 422,407 + MMJJ_RS02225 0.37 +0.5 422,411 - MMJJ_RS02225 0.39 -0.2 422,412 + MMJJ_RS02225 0.39 -2.2 422,414 + MMJJ_RS02225 0.40 -0.2 422,429 - MMJJ_RS02225 0.45 -0.1 422,468 - MMJJ_RS02225 0.58 +0.3 422,469 + MMJJ_RS02225 0.59 +0.5 422,479 - MMJJ_RS02225 0.62 +0.5 422,479 - MMJJ_RS02225 0.62 +0.3 422,481 - MMJJ_RS02225 0.63 +0.6 422,481 - MMJJ_RS02225 0.63 +0.5 422,482 + MMJJ_RS02225 0.63 +0.1 422,482 + MMJJ_RS02225 0.63 +3.2 422,482 + MMJJ_RS02225 0.63 -0.4 422,483 - MMJJ_RS02225 0.64 +0.5 422,483 - MMJJ_RS02225 0.64 -2.4 422,483 - MMJJ_RS02225 0.64 -1.1 422,483 - MMJJ_RS02225 0.64 -0.1 422,483 - MMJJ_RS02225 0.64 -1.2 422,483 - MMJJ_RS02225 0.64 +1.2 422,484 + MMJJ_RS02225 0.64 +0.5 422,484 + MMJJ_RS02225 0.64 -0.6 422,484 + MMJJ_RS02225 0.64 +1.2 422,520 + MMJJ_RS02225 0.76 -0.1 422,528 - MMJJ_RS02225 0.79 +0.5 422,528 - MMJJ_RS02225 0.79 +0.2 422,532 - MMJJ_RS02225 0.80 -0.7 422,532 - MMJJ_RS02225 0.80 -0.0 422,533 + MMJJ_RS02225 0.81 +1.0 422,535 - MMJJ_RS02225 0.81 +1.1 422,535 - MMJJ_RS02225 0.81 +0.7 422,535 - MMJJ_RS02225 0.81 -0.2 422,535 - MMJJ_RS02225 0.81 -0.5 422,536 + MMJJ_RS02225 0.82 +0.8 422,536 + MMJJ_RS02225 0.82 +1.7 422,536 + MMJJ_RS02225 0.82 -0.9 422,537 - MMJJ_RS02225 0.82 +0.6 422,537 - MMJJ_RS02225 0.82 +2.4 422,537 - MMJJ_RS02225 0.82 +0.2 422,537 - MMJJ_RS02225 0.82 +0.7 422,537 - MMJJ_RS02225 0.82 -0.4 422,537 - MMJJ_RS02225 0.82 +0.5 422,538 + MMJJ_RS02225 0.82 -0.1 422,538 + MMJJ_RS02225 0.82 +0.3 422,538 + MMJJ_RS02225 0.82 +0.9 422,538 + MMJJ_RS02225 0.82 +0.9 422,582 + +0.7 422,610 - -0.2 422,611 + -0.2 422,616 + +0.0 422,619 - -0.6 422,626 - -1.5 422,627 + -1.2 422,627 + -0.7 422,628 - -1.0 422,628 - +0.8 422,628 - +0.4 422,634 - +0.5 422,656 - +0.0 422,656 - +0.0 422,656 - +0.3 422,656 - +0.3 422,656 - -1.5 422,656 - -0.1 422,656 - -0.5 422,656 - -1.1 422,656 - -0.4 422,656 - +0.9 422,656 - +0.1 422,656 - +1.0 422,656 - -1.6 422,657 + -0.3 422,657 + +0.2 422,657 + +0.4 422,657 + -0.1 422,657 + -0.1 422,657 + +0.5 422,657 + -0.9 422,657 + +0.2 422,657 + -1.1 422,657 + +0.8 422,657 + +1.4 422,658 - +0.8 422,658 - +0.5 422,658 - +0.6 422,658 - +0.7 422,658 - +0.3 422,659 + -0.3 422,659 + -0.5 422,659 + +0.1 422,659 + -0.8 422,659 + -2.4 422,659 + +0.1 422,659 + +1.0 422,659 + +1.0 422,660 - +0.6 422,660 - -1.0 422,660 - +1.0 422,660 - +0.0 422,660 - +0.8 422,661 + -0.4 422,661 + -0.4 422,661 + -1.0 422,661 + -3.8 422,661 + +0.6 422,661 + -0.5 422,661 + +0.8 422,665 - +0.0 422,665 - -0.6 422,666 + -3.4 422,666 + -0.1 422,669 - -3.7 422,669 - -1.5 422,670 + +1.0 422,692 - -2.1 422,692 - -0.5 422,693 + +0.5 422,697 + -0.1 422,724 - -0.2 422,725 + -0.1 422,827 - -1.8 422,940 - MMJJ_RS02230 0.16 +0.0 422,940 - MMJJ_RS02230 0.16 -0.4 422,941 + MMJJ_RS02230 0.16 +0.7 422,978 - MMJJ_RS02230 0.22 +0.4 422,978 - MMJJ_RS02230 0.22 -1.1 422,979 + MMJJ_RS02230 0.22 +0.1 422,979 + MMJJ_RS02230 0.22 -1.1 423,051 - MMJJ_RS02230 0.34 -0.3 423,062 - MMJJ_RS02230 0.36 -0.5 423,062 - MMJJ_RS02230 0.36 +0.0 423,063 + MMJJ_RS02230 0.36 +1.7 423,086 - MMJJ_RS02230 0.40 +0.1 423,107 + MMJJ_RS02230 0.43 -0.0 423,107 + MMJJ_RS02230 0.43 -0.4 423,157 - MMJJ_RS02230 0.51 -0.7 423,159 - MMJJ_RS02230 0.52 +0.2 423,190 - MMJJ_RS02230 0.57 +0.7 423,215 - MMJJ_RS02230 0.61 +0.9 423,222 + MMJJ_RS02230 0.62 +0.3 423,250 - MMJJ_RS02230 0.67 -0.7 423,251 + MMJJ_RS02230 0.67 +0.4 423,286 - MMJJ_RS02230 0.72 +0.1 423,287 + MMJJ_RS02230 0.73 +0.7 423,300 + MMJJ_RS02230 0.75 -0.1 423,300 + MMJJ_RS02230 0.75 +0.6 423,306 + MMJJ_RS02230 0.76 +0.1 423,306 + MMJJ_RS02230 0.76 +0.5 423,306 + MMJJ_RS02230 0.76 -0.7 423,311 - MMJJ_RS02230 0.76 +0.6 423,311 - MMJJ_RS02230 0.76 +1.2 423,311 - MMJJ_RS02230 0.76 -0.1 423,311 - MMJJ_RS02230 0.76 -1.5 423,311 - MMJJ_RS02230 0.76 +0.2 423,311 - MMJJ_RS02230 0.76 -0.6 423,311 - MMJJ_RS02230 0.76 -0.6 423,311 - MMJJ_RS02230 0.76 +0.0 423,311 - MMJJ_RS02230 0.76 -0.7 423,311 - MMJJ_RS02230 0.76 -0.4 423,312 + MMJJ_RS02230 0.77 +0.5 423,312 + MMJJ_RS02230 0.77 -3.3 423,312 + MMJJ_RS02230 0.77 +0.8 423,312 + MMJJ_RS02230 0.77 +0.6 423,312 + MMJJ_RS02230 0.77 +0.2 423,312 + MMJJ_RS02230 0.77 -0.2 423,312 + MMJJ_RS02230 0.77 -1.2 423,312 + MMJJ_RS02230 0.77 +0.1 423,312 + MMJJ_RS02230 0.77 +0.4 423,312 + MMJJ_RS02230 0.77 +0.5 423,312 + MMJJ_RS02230 0.77 -0.6 423,312 + MMJJ_RS02230 0.77 +0.4 423,312 + MMJJ_RS02230 0.77 +0.1 423,312 + MMJJ_RS02230 0.77 +0.4 423,312 + MMJJ_RS02230 0.77 +0.3 423,313 - MMJJ_RS02230 0.77 -0.8 423,314 + MMJJ_RS02230 0.77 -0.2 423,325 - MMJJ_RS02230 0.79 +1.0 423,325 - MMJJ_RS02230 0.79 -2.0 423,325 - MMJJ_RS02230 0.79 -0.4 423,328 + MMJJ_RS02230 0.79 +0.3 423,334 - MMJJ_RS02230 0.80 -1.4 423,334 - MMJJ_RS02230 0.80 -1.8 423,334 - MMJJ_RS02230 0.80 +1.1 423,334 - MMJJ_RS02230 0.80 -1.6 423,335 + MMJJ_RS02230 0.80 -0.3 423,335 + MMJJ_RS02230 0.80 +2.9 423,340 + MMJJ_RS02230 0.81 -0.5 423,380 - MMJJ_RS02230 0.88 -0.5 423,381 + MMJJ_RS02230 0.88 -0.4 423,381 + MMJJ_RS02230 0.88 -1.0 423,381 + MMJJ_RS02230 0.88 +0.2 423,418 - +0.5 423,418 - +0.6 423,440 + +0.8 423,442 - -1.2 423,506 + -1.6 423,509 + -0.7 423,511 - -2.2 423,511 - +2.0 423,512 + -1.9 423,520 + -2.1 423,522 - +0.1 423,524 - +0.5 423,524 - +0.0 423,525 + +0.6 423,526 - +1.0 423,526 - -0.8 423,527 + +1.0 423,527 + -1.0 423,575 + +0.8 423,587 + -0.3
Or see this region's nucleotide sequence