Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS00785

Experiment: Iron excess (2.5x) , H2 media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS00775 and MMJJ_RS00780 are separated by 11 nucleotidesMMJJ_RS00780 and MMJJ_RS00785 are separated by 28 nucleotidesMMJJ_RS00785 and MMJJ_RS00790 are separated by 132 nucleotidesMMJJ_RS00790 and MMJJ_RS00795 are separated by 14 nucleotides MMJJ_RS00775: MMJJ_RS00775 - hypothetical protein, at 147,959 to 148,429 _RS00775 MMJJ_RS00780: MMJJ_RS00780 - M48 family metallopeptidase, at 148,441 to 149,109 _RS00780 MMJJ_RS00785: MMJJ_RS00785 - hypothetical protein, at 149,138 to 149,329 _RS00785 MMJJ_RS00790: MMJJ_RS00790 - ribonuclease H family protein, at 149,462 to 150,067 _RS00790 MMJJ_RS00795: MMJJ_RS00795 - 2-hydroxyacyl-CoA dehydratase family protein, at 150,082 to 151,203 _RS00795 Position (kb) 149 150Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 148.180 kb on + strand, within MMJJ_RS00775at 148.197 kb on + strand, within MMJJ_RS00775at 148.197 kb on + strand, within MMJJ_RS00775at 148.198 kb on - strand, within MMJJ_RS00775at 148.198 kb on - strand, within MMJJ_RS00775at 148.236 kb on + strand, within MMJJ_RS00775at 148.287 kb on - strand, within MMJJ_RS00775at 148.288 kb on + strand, within MMJJ_RS00775at 148.338 kb on - strand, within MMJJ_RS00775at 148.338 kb on - strand, within MMJJ_RS00775at 148.353 kb on - strand, within MMJJ_RS00775at 148.353 kb on - strand, within MMJJ_RS00775at 148.354 kb on + strand, within MMJJ_RS00775at 148.354 kb on + strand, within MMJJ_RS00775at 148.380 kb on - strand, within MMJJ_RS00775at 148.380 kb on - strand, within MMJJ_RS00775at 148.395 kb on - strandat 148.415 kb on + strandat 148.415 kb on + strandat 148.419 kb on - strandat 148.419 kb on - strandat 148.420 kb on + strandat 148.427 kb on - strandat 148.428 kb on + strandat 148.470 kb on - strandat 148.506 kb on - strandat 148.519 kb on + strand, within MMJJ_RS00780at 148.537 kb on - strand, within MMJJ_RS00780at 148.565 kb on - strand, within MMJJ_RS00780at 148.565 kb on - strand, within MMJJ_RS00780at 148.565 kb on - strand, within MMJJ_RS00780at 148.565 kb on - strand, within MMJJ_RS00780at 148.572 kb on - strand, within MMJJ_RS00780at 148.607 kb on + strand, within MMJJ_RS00780at 148.689 kb on - strand, within MMJJ_RS00780at 148.693 kb on - strand, within MMJJ_RS00780at 148.698 kb on - strand, within MMJJ_RS00780at 148.700 kb on - strand, within MMJJ_RS00780at 148.700 kb on - strand, within MMJJ_RS00780at 148.700 kb on - strand, within MMJJ_RS00780at 148.700 kb on - strand, within MMJJ_RS00780at 148.701 kb on + strand, within MMJJ_RS00780at 148.701 kb on + strand, within MMJJ_RS00780at 148.796 kb on + strand, within MMJJ_RS00780at 148.796 kb on + strand, within MMJJ_RS00780at 148.835 kb on - strand, within MMJJ_RS00780at 148.855 kb on - strand, within MMJJ_RS00780at 148.856 kb on + strand, within MMJJ_RS00780at 148.856 kb on + strand, within MMJJ_RS00780at 148.866 kb on - strand, within MMJJ_RS00780at 148.866 kb on - strand, within MMJJ_RS00780at 148.867 kb on + strand, within MMJJ_RS00780at 148.868 kb on - strand, within MMJJ_RS00780at 148.869 kb on + strand, within MMJJ_RS00780at 148.883 kb on - strand, within MMJJ_RS00780at 148.986 kb on - strand, within MMJJ_RS00780at 148.986 kb on - strand, within MMJJ_RS00780at 148.995 kb on - strand, within MMJJ_RS00780at 149.000 kb on - strand, within MMJJ_RS00780at 149.001 kb on + strand, within MMJJ_RS00780at 149.032 kb on - strand, within MMJJ_RS00780at 149.063 kb on - strandat 149.063 kb on - strandat 149.105 kb on + strandat 149.171 kb on - strand, within MMJJ_RS00785at 149.290 kb on - strand, within MMJJ_RS00785at 149.291 kb on + strand, within MMJJ_RS00785at 149.352 kb on + strandat 149.356 kb on - strandat 149.395 kb on + strandat 149.399 kb on - strandat 149.400 kb on + strandat 149.412 kb on + strandat 149.418 kb on + strandat 149.426 kb on - strandat 149.426 kb on - strandat 149.426 kb on - strandat 149.426 kb on - strandat 149.427 kb on + strandat 149.427 kb on + strandat 149.428 kb on - strandat 149.428 kb on - strandat 149.429 kb on + strandat 149.429 kb on + strandat 149.429 kb on + strandat 149.430 kb on - strandat 149.430 kb on - strandat 149.430 kb on - strandat 149.431 kb on + strandat 149.431 kb on + strandat 149.431 kb on + strandat 149.431 kb on + strandat 149.473 kb on + strandat 149.473 kb on + strandat 149.474 kb on - strandat 149.475 kb on + strandat 149.475 kb on + strandat 149.573 kb on + strand, within MMJJ_RS00790at 149.597 kb on - strand, within MMJJ_RS00790at 149.601 kb on - strand, within MMJJ_RS00790at 149.629 kb on - strand, within MMJJ_RS00790at 149.634 kb on - strand, within MMJJ_RS00790at 149.702 kb on + strand, within MMJJ_RS00790at 149.709 kb on + strand, within MMJJ_RS00790at 149.730 kb on - strand, within MMJJ_RS00790at 149.731 kb on + strand, within MMJJ_RS00790at 149.756 kb on + strand, within MMJJ_RS00790at 149.871 kb on - strand, within MMJJ_RS00790at 149.871 kb on - strand, within MMJJ_RS00790at 149.873 kb on - strand, within MMJJ_RS00790at 149.945 kb on - strand, within MMJJ_RS00790at 149.948 kb on + strand, within MMJJ_RS00790at 149.966 kb on - strand, within MMJJ_RS00790at 150.019 kb on - strandat 150.040 kb on - strandat 150.041 kb on + strandat 150.041 kb on + strandat 150.074 kb on + strandat 150.079 kb on + strandat 150.118 kb on - strandat 150.159 kb on - strandat 150.160 kb on + strandat 150.160 kb on + strandat 150.200 kb on + strand, within MMJJ_RS00795at 150.216 kb on - strand, within MMJJ_RS00795at 150.217 kb on + strand, within MMJJ_RS00795at 150.230 kb on - strand, within MMJJ_RS00795at 150.231 kb on + strand, within MMJJ_RS00795at 150.235 kb on - strand, within MMJJ_RS00795at 150.236 kb on + strand, within MMJJ_RS00795at 150.236 kb on + strand, within MMJJ_RS00795at 150.236 kb on + strand, within MMJJ_RS00795at 150.240 kb on - strand, within MMJJ_RS00795at 150.240 kb on - strand, within MMJJ_RS00795at 150.240 kb on - strand, within MMJJ_RS00795at 150.240 kb on - strand, within MMJJ_RS00795at 150.240 kb on - strand, within MMJJ_RS00795at 150.241 kb on + strand, within MMJJ_RS00795at 150.241 kb on + strand, within MMJJ_RS00795at 150.241 kb on + strand, within MMJJ_RS00795at 150.241 kb on + strand, within MMJJ_RS00795at 150.241 kb on + strand, within MMJJ_RS00795at 150.242 kb on - strand, within MMJJ_RS00795at 150.242 kb on - strand, within MMJJ_RS00795at 150.243 kb on + strand, within MMJJ_RS00795at 150.243 kb on + strand, within MMJJ_RS00795at 150.246 kb on + strand, within MMJJ_RS00795at 150.246 kb on + strand, within MMJJ_RS00795at 150.275 kb on + strand, within MMJJ_RS00795at 150.285 kb on - strand, within MMJJ_RS00795

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Per-strain Table

Position Strand Gene LocusTag Fraction Iron excess (2.5x) , H2 media
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148,180 + MMJJ_RS00775 0.47 +0.8
148,197 + MMJJ_RS00775 0.51 -0.5
148,197 + MMJJ_RS00775 0.51 +0.4
148,198 - MMJJ_RS00775 0.51 -0.2
148,198 - MMJJ_RS00775 0.51 +1.1
148,236 + MMJJ_RS00775 0.59 -0.2
148,287 - MMJJ_RS00775 0.70 -0.2
148,288 + MMJJ_RS00775 0.70 -1.2
148,338 - MMJJ_RS00775 0.80 -0.5
148,338 - MMJJ_RS00775 0.80 +0.7
148,353 - MMJJ_RS00775 0.84 +0.2
148,353 - MMJJ_RS00775 0.84 -0.1
148,354 + MMJJ_RS00775 0.84 -0.9
148,354 + MMJJ_RS00775 0.84 +0.3
148,380 - MMJJ_RS00775 0.89 +1.0
148,380 - MMJJ_RS00775 0.89 +0.4
148,395 - -0.1
148,415 + -0.3
148,415 + +0.5
148,419 - -0.0
148,419 - -1.0
148,420 + -1.6
148,427 - +1.9
148,428 + -0.7
148,470 - -0.7
148,506 - -1.0
148,519 + MMJJ_RS00780 0.12 -0.3
148,537 - MMJJ_RS00780 0.14 +0.3
148,565 - MMJJ_RS00780 0.19 +0.5
148,565 - MMJJ_RS00780 0.19 -0.4
148,565 - MMJJ_RS00780 0.19 -1.4
148,565 - MMJJ_RS00780 0.19 -0.8
148,572 - MMJJ_RS00780 0.20 -0.6
148,607 + MMJJ_RS00780 0.25 +0.1
148,689 - MMJJ_RS00780 0.37 -0.1
148,693 - MMJJ_RS00780 0.38 -2.3
148,698 - MMJJ_RS00780 0.38 -0.1
148,700 - MMJJ_RS00780 0.39 -2.0
148,700 - MMJJ_RS00780 0.39 +1.6
148,700 - MMJJ_RS00780 0.39 -0.8
148,700 - MMJJ_RS00780 0.39 -1.3
148,701 + MMJJ_RS00780 0.39 +0.4
148,701 + MMJJ_RS00780 0.39 -1.5
148,796 + MMJJ_RS00780 0.53 +0.4
148,796 + MMJJ_RS00780 0.53 -0.2
148,835 - MMJJ_RS00780 0.59 +0.3
148,855 - MMJJ_RS00780 0.62 +0.5
148,856 + MMJJ_RS00780 0.62 +0.0
148,856 + MMJJ_RS00780 0.62 +0.8
148,866 - MMJJ_RS00780 0.64 -1.2
148,866 - MMJJ_RS00780 0.64 +0.9
148,867 + MMJJ_RS00780 0.64 +0.8
148,868 - MMJJ_RS00780 0.64 -0.5
148,869 + MMJJ_RS00780 0.64 -1.0
148,883 - MMJJ_RS00780 0.66 +0.8
148,986 - MMJJ_RS00780 0.81 -1.2
148,986 - MMJJ_RS00780 0.81 -0.6
148,995 - MMJJ_RS00780 0.83 +2.7
149,000 - MMJJ_RS00780 0.84 -0.8
149,001 + MMJJ_RS00780 0.84 +0.0
149,032 - MMJJ_RS00780 0.88 +0.5
149,063 - +0.5
149,063 - -1.0
149,105 + -3.2
149,171 - MMJJ_RS00785 0.17 +1.0
149,290 - MMJJ_RS00785 0.79 +0.0
149,291 + MMJJ_RS00785 0.80 +1.5
149,352 + +0.8
149,356 - -1.0
149,395 + -0.6
149,399 - -0.0
149,400 + -0.2
149,412 + -0.3
149,418 + +1.1
149,426 - +0.8
149,426 - +0.1
149,426 - -0.1
149,426 - -0.3
149,427 + +0.2
149,427 + +1.0
149,428 - +1.0
149,428 - -0.1
149,429 + -2.2
149,429 + -0.3
149,429 + -0.7
149,430 - -0.3
149,430 - -1.1
149,430 - +1.3
149,431 + +0.6
149,431 + +0.7
149,431 + -1.4
149,431 + -1.8
149,473 + +0.5
149,473 + +0.8
149,474 - -1.2
149,475 + +0.0
149,475 + -2.1
149,573 + MMJJ_RS00790 0.18 -0.8
149,597 - MMJJ_RS00790 0.22 -0.9
149,601 - MMJJ_RS00790 0.23 +0.3
149,629 - MMJJ_RS00790 0.28 +0.2
149,634 - MMJJ_RS00790 0.28 +0.8
149,702 + MMJJ_RS00790 0.40 -0.4
149,709 + MMJJ_RS00790 0.41 +0.4
149,730 - MMJJ_RS00790 0.44 -1.5
149,731 + MMJJ_RS00790 0.44 -0.7
149,756 + MMJJ_RS00790 0.49 -2.9
149,871 - MMJJ_RS00790 0.67 -0.2
149,871 - MMJJ_RS00790 0.67 +0.8
149,873 - MMJJ_RS00790 0.68 -0.1
149,945 - MMJJ_RS00790 0.80 +0.9
149,948 + MMJJ_RS00790 0.80 +0.7
149,966 - MMJJ_RS00790 0.83 +0.5
150,019 - -0.9
150,040 - +0.7
150,041 + +0.5
150,041 + +0.3
150,074 + -0.4
150,079 + +1.6
150,118 - +0.6
150,159 - +0.2
150,160 + +1.3
150,160 + -0.2
150,200 + MMJJ_RS00795 0.11 +0.4
150,216 - MMJJ_RS00795 0.12 +0.4
150,217 + MMJJ_RS00795 0.12 -0.3
150,230 - MMJJ_RS00795 0.13 -1.2
150,231 + MMJJ_RS00795 0.13 -0.0
150,235 - MMJJ_RS00795 0.14 -0.3
150,236 + MMJJ_RS00795 0.14 +1.2
150,236 + MMJJ_RS00795 0.14 -0.1
150,236 + MMJJ_RS00795 0.14 -1.2
150,240 - MMJJ_RS00795 0.14 -0.4
150,240 - MMJJ_RS00795 0.14 -0.0
150,240 - MMJJ_RS00795 0.14 -0.4
150,240 - MMJJ_RS00795 0.14 +0.7
150,240 - MMJJ_RS00795 0.14 -0.5
150,241 + MMJJ_RS00795 0.14 +0.6
150,241 + MMJJ_RS00795 0.14 +0.2
150,241 + MMJJ_RS00795 0.14 +0.6
150,241 + MMJJ_RS00795 0.14 +0.1
150,241 + MMJJ_RS00795 0.14 +0.1
150,242 - MMJJ_RS00795 0.14 +1.2
150,242 - MMJJ_RS00795 0.14 +0.5
150,243 + MMJJ_RS00795 0.14 +0.3
150,243 + MMJJ_RS00795 0.14 +0.6
150,246 + MMJJ_RS00795 0.15 -0.4
150,246 + MMJJ_RS00795 0.15 -0.7
150,275 + MMJJ_RS00795 0.17 +0.9
150,285 - MMJJ_RS00795 0.18 -0.4

Or see this region's nucleotide sequence