Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS13015

Experiment: R2A with sulfate 250 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with sulfate 250 mM
2,905,843	+		LRK54_RS13010	0.14	-1.3
2,905,843	+		LRK54_RS13010	0.14	-1.5
2,905,843	+		LRK54_RS13010	0.14	+0.7
2,905,843	+		LRK54_RS13010	0.14	+0.7
2,905,843	+		LRK54_RS13010	0.14	+0.7
2,905,843	+		LRK54_RS13010	0.14	+0.7
2,905,843	+		LRK54_RS13010	0.14	+1.2
2,905,843	+		LRK54_RS13010	0.14	+1.1
2,905,843	+		LRK54_RS13010	0.14	+0.2
2,905,843	+		LRK54_RS13010	0.14	+1.0
2,905,843	+		LRK54_RS13010	0.14	+1.2
2,905,843	+		LRK54_RS13010	0.14	+1.6
2,905,843	+		LRK54_RS13010	0.14	+0.4
2,905,843	+		LRK54_RS13010	0.14	+1.2
2,905,843	+		LRK54_RS13010	0.14	+0.5
2,905,843	+		LRK54_RS13010	0.14	+0.5
2,905,843	+		LRK54_RS13010	0.14	-0.4
2,905,843	+		LRK54_RS13010	0.14	+1.4
2,905,844	-		LRK54_RS13010	0.14	+0.8
2,905,844	-		LRK54_RS13010	0.14	+0.7
2,905,844	-		LRK54_RS13010	0.14	+0.8
2,905,844	-		LRK54_RS13010	0.14	-1.8
2,905,844	-		LRK54_RS13010	0.14	+0.6
2,905,844	-		LRK54_RS13010	0.14	+0.7
2,905,844	-		LRK54_RS13010	0.14	+0.9
2,905,844	-		LRK54_RS13010	0.14	+2.1
2,905,844	-		LRK54_RS13010	0.14	-0.2
2,905,844	-		LRK54_RS13010	0.14	+0.9
2,905,844	-		LRK54_RS13010	0.14	+1.2
2,905,844	-		LRK54_RS13010	0.14	+1.0
2,905,844	-		LRK54_RS13010	0.14	+0.6
2,905,844	-		LRK54_RS13010	0.14	+0.5
2,905,844	-		LRK54_RS13010	0.14	-0.9
2,905,844	-		LRK54_RS13010	0.14	+1.0
2,905,844	-		LRK54_RS13010	0.14	+1.3
2,905,844	-		LRK54_RS13010	0.14	+1.2
2,905,844	-		LRK54_RS13010	0.14	+0.7
2,905,844	-		LRK54_RS13010	0.14	+0.9
2,905,844	-		LRK54_RS13010	0.14	+1.0
2,905,844	-		LRK54_RS13010	0.14	+0.9
2,905,999	+		LRK54_RS13010	0.29	+0.8
2,906,102	-		LRK54_RS13010	0.39	-0.2
2,906,102	-		LRK54_RS13010	0.39	+1.2
2,906,102	-		LRK54_RS13010	0.39	+1.3
2,906,110	+		LRK54_RS13010	0.40	+1.7
2,906,110	+		LRK54_RS13010	0.40	+1.0
2,906,110	+		LRK54_RS13010	0.40	+0.5
2,906,110	+		LRK54_RS13010	0.40	+0.3
2,906,110	+		LRK54_RS13010	0.40	+1.3
2,906,110	+		LRK54_RS13010	0.40	+0.9
2,906,110	+		LRK54_RS13010	0.40	+0.7
2,906,110	+		LRK54_RS13010	0.40	+0.6
2,906,111	-		LRK54_RS13010	0.40	-0.5
2,906,111	-		LRK54_RS13010	0.40	+2.3
2,906,111	-		LRK54_RS13010	0.40	+0.7
2,906,111	-		LRK54_RS13010	0.40	+0.7
2,906,111	-		LRK54_RS13010	0.40	+0.6
2,906,112	+		LRK54_RS13010	0.40	+1.9
2,906,326	+		LRK54_RS13010	0.61	+0.4
2,906,407	+		LRK54_RS13010	0.69	+1.3
2,906,408	-		LRK54_RS13010	0.69	+0.8
2,906,456	+		LRK54_RS13010	0.74	+0.1
2,906,747	+				+1.0
2,906,747	+				-0.6
2,906,771	-				-1.2
2,906,789	+				-2.2
2,906,789	+				-1.5
2,906,789	+				-0.6
2,906,790	-				-0.3
2,906,790	-				+1.1
2,906,879	+				-0.3
2,906,879	+				-0.1
2,906,879	+				+0.0
2,906,879	+				-1.5
2,906,879	+				-0.8
2,906,879	+				+0.4
2,906,879	+				-0.2
2,906,879	+				-1.5
2,906,879	+				-0.4
2,906,879	+				-0.3
2,906,879	+				+2.7
2,906,879	+				-0.3
2,906,879	+				+0.4
2,906,879	+				+0.3
2,906,879	+				+0.2
2,906,879	+				+1.0
2,906,879	+				+0.3
2,906,880	-				+1.1
2,906,880	-				+0.7
2,906,880	-				-0.6
2,906,880	-				-1.3
2,906,880	-				+0.1
2,906,880	-				+0.0
2,906,880	-				+0.1
2,906,906	+				-0.6
2,906,906	+				+0.1
2,906,906	+				-1.6
2,906,907	-				+1.4
2,906,907	-				+0.3
2,906,912	+				+1.7
2,906,912	+				-0.4
2,906,912	+				-1.1
2,906,912	+				+0.5
2,906,912	+				+0.5
2,906,912	+				-0.1
2,906,912	+				+0.5
2,906,912	+				-1.9
2,906,912	+				-1.5
2,906,912	+				-0.1
2,906,912	+				-0.8
2,906,913	-				+0.9
2,906,913	-				+0.8
2,906,913	-				+0.2
2,906,913	-				+0.1
2,906,913	-				-1.8
2,906,913	-				+0.3
2,906,913	-				+2.1
2,906,913	-				-1.1
2,906,913	-				-0.4
2,906,913	-				+0.7
2,907,071	+		LRK54_RS13015	0.10	+0.5
2,907,071	+		LRK54_RS13015	0.10	-0.9
2,907,072	-		LRK54_RS13015	0.10	+0.7
2,907,072	-		LRK54_RS13015	0.10	-0.3
2,907,072	-		LRK54_RS13015	0.10	+0.7
2,907,080	+		LRK54_RS13015	0.10	+0.1
2,907,080	+		LRK54_RS13015	0.10	+0.9
2,907,080	+		LRK54_RS13015	0.10	+0.9
2,907,080	+		LRK54_RS13015	0.10	+0.5
2,907,080	+		LRK54_RS13015	0.10	-0.1
2,907,081	-		LRK54_RS13015	0.10	+1.7
2,907,081	-		LRK54_RS13015	0.10	-0.7
2,907,081	-		LRK54_RS13015	0.10	+0.6
2,907,107	+		LRK54_RS13015	0.12	-0.3
2,907,107	+		LRK54_RS13015	0.12	-0.8
2,907,108	-		LRK54_RS13015	0.12	-1.8
2,907,108	-		LRK54_RS13015	0.12	+0.9
2,907,108	-		LRK54_RS13015	0.12	-1.3
2,907,108	-		LRK54_RS13015	0.12	-0.4
2,907,108	-		LRK54_RS13015	0.12	+0.6
2,907,108	-		LRK54_RS13015	0.12	+1.0
2,907,108	-		LRK54_RS13015	0.12	-0.2
2,907,134	+		LRK54_RS13015	0.13	-1.1
2,907,134	+		LRK54_RS13015	0.13	-0.9
2,907,134	+		LRK54_RS13015	0.13	-0.7
2,907,134	+		LRK54_RS13015	0.13	-2.2
2,907,134	+		LRK54_RS13015	0.13	+1.1
2,907,135	-		LRK54_RS13015	0.13	-0.0
2,907,135	-		LRK54_RS13015	0.13	+1.1
2,907,135	-		LRK54_RS13015	0.13	-0.3
2,907,135	-		LRK54_RS13015	0.13	-0.1
2,907,135	-		LRK54_RS13015	0.13	-1.0
2,907,135	-		LRK54_RS13015	0.13	-0.9
2,907,135	-		LRK54_RS13015	0.13	+1.7
2,907,135	-		LRK54_RS13015	0.13	-1.9
2,907,135	-		LRK54_RS13015	0.13	+0.1
2,907,135	-		LRK54_RS13015	0.13	+0.7
2,907,356	+		LRK54_RS13015	0.21	+0.0
2,907,356	+		LRK54_RS13015	0.21	+0.7
2,907,356	+		LRK54_RS13015	0.21	+1.0
2,907,356	+		LRK54_RS13015	0.21	+0.0
2,907,356	+		LRK54_RS13015	0.21	-1.0
2,907,356	+		LRK54_RS13015	0.21	-0.6
2,907,356	+		LRK54_RS13015	0.21	-0.8
2,907,356	+		LRK54_RS13015	0.21	+0.1
2,907,357	-		LRK54_RS13015	0.22	-0.5
2,907,357	-		LRK54_RS13015	0.22	-0.5
2,907,357	-		LRK54_RS13015	0.22	+0.1
2,907,357	-		LRK54_RS13015	0.22	-1.1
2,907,464	+		LRK54_RS13015	0.26	-0.8
2,907,476	+		LRK54_RS13015	0.26	+0.1
2,907,476	+		LRK54_RS13015	0.26	-1.9
2,907,476	+		LRK54_RS13015	0.26	+0.1
2,907,477	-		LRK54_RS13015	0.26	-2.0
2,907,477	-		LRK54_RS13015	0.26	+1.1
2,907,477	-		LRK54_RS13015	0.26	-0.9
2,907,569	+		LRK54_RS13015	0.30	-0.1
2,907,569	+		LRK54_RS13015	0.30	+0.0
2,907,569	+		LRK54_RS13015	0.30	-0.5
2,907,569	+		LRK54_RS13015	0.30	+3.3
2,907,569	+		LRK54_RS13015	0.30	-0.6
2,907,570	-		LRK54_RS13015	0.30	+0.3
2,907,570	-		LRK54_RS13015	0.30	-0.4
2,907,570	-		LRK54_RS13015	0.30	-1.9
2,907,570	-		LRK54_RS13015	0.30	-0.1
2,907,570	-		LRK54_RS13015	0.30	-0.3
2,907,570	-		LRK54_RS13015	0.30	-0.6
2,907,570	-		LRK54_RS13015	0.30	+1.0
2,907,736	+		LRK54_RS13015	0.37	-1.6
2,907,736	+		LRK54_RS13015	0.37	-0.1
2,907,736	+		LRK54_RS13015	0.37	-0.8
2,907,736	+		LRK54_RS13015	0.37	-0.4
2,907,736	+		LRK54_RS13015	0.37	+0.3
2,907,737	-		LRK54_RS13015	0.37	+0.2
2,907,737	-		LRK54_RS13015	0.37	-0.3
2,907,737	-		LRK54_RS13015	0.37	+0.5
2,907,737	-		LRK54_RS13015	0.37	-0.3
2,907,737	-		LRK54_RS13015	0.37	-0.1
2,907,737	-		LRK54_RS13015	0.37	-1.4
2,907,815	+		LRK54_RS13015	0.40	+0.5
2,907,816	-		LRK54_RS13015	0.40	+0.5
2,907,851	-		LRK54_RS13015	0.41	-0.8
2,907,851	-		LRK54_RS13015	0.41	-0.3
2,907,983	+		LRK54_RS13015	0.47	+0.2
2,907,984	-		LRK54_RS13015	0.47	-1.1
2,907,984	-		LRK54_RS13015	0.47	+0.8
2,908,607	+		LRK54_RS13015	0.72	-0.7
2,908,607	+		LRK54_RS13015	0.72	+0.0
2,908,607	+		LRK54_RS13015	0.72	+0.7
2,908,607	+		LRK54_RS13015	0.72	+1.7
2,908,607	+		LRK54_RS13015	0.72	+1.0
2,908,608	-		LRK54_RS13015	0.72	+1.0
2,908,608	-		LRK54_RS13015	0.72	-0.1
2,908,608	-		LRK54_RS13015	0.72	-0.5
2,908,608	-		LRK54_RS13015	0.72	+0.4
2,908,608	-		LRK54_RS13015	0.72	+0.2
2,908,608	-		LRK54_RS13015	0.72	-1.0
2,908,608	-		LRK54_RS13015	0.72	-0.6
2,908,608	-		LRK54_RS13015	0.72	+1.5
2,908,608	-		LRK54_RS13015	0.72	-0.3
2,908,619	+		LRK54_RS13015	0.72	-0.3
2,908,619	+		LRK54_RS13015	0.72	+1.1
2,908,619	+		LRK54_RS13015	0.72	-0.8
2,908,620	-		LRK54_RS13015	0.72	+0.5
2,908,620	-		LRK54_RS13015	0.72	+0.3
2,908,620	-		LRK54_RS13015	0.72	-0.6
2,908,620	-		LRK54_RS13015	0.72	-1.1
2,908,620	-		LRK54_RS13015	0.72	-0.0
2,908,620	-		LRK54_RS13015	0.72	+0.7
2,908,620	-		LRK54_RS13015	0.72	+0.3
2,908,822	-		LRK54_RS13015	0.80	-2.0
2,908,848	+		LRK54_RS13015	0.81	-0.6
2,908,848	+		LRK54_RS13015	0.81	-1.0
2,908,848	+		LRK54_RS13015	0.81	-1.1
2,908,848	+		LRK54_RS13015	0.81	+0.7
2,908,848	+		LRK54_RS13015	0.81	+0.1
2,908,848	+		LRK54_RS13015	0.81	-0.6
2,908,848	+		LRK54_RS13015	0.81	-0.5
2,908,848	+		LRK54_RS13015	0.81	-0.5
2,908,848	+		LRK54_RS13015	0.81	-0.3
2,908,849	-		LRK54_RS13015	0.81	-2.3
2,908,849	-		LRK54_RS13015	0.81	+0.4
2,908,849	-		LRK54_RS13015	0.81	+0.8
2,908,849	-		LRK54_RS13015	0.81	-1.4
2,908,849	-		LRK54_RS13015	0.81	+0.1
2,908,849	-		LRK54_RS13015	0.81	-2.3
2,908,849	-		LRK54_RS13015	0.81	-0.2
2,908,849	-		LRK54_RS13015	0.81	+0.1
2,909,033	+		LRK54_RS13015	0.89	-0.4
2,909,034	-		LRK54_RS13015	0.89	+0.8
2,909,048	+		LRK54_RS13015	0.89	-0.6
2,909,048	+		LRK54_RS13015	0.89	-0.4
2,909,048	+		LRK54_RS13015	0.89	-0.4
2,909,049	-		LRK54_RS13015	0.89	-0.6
2,909,049	-		LRK54_RS13015	0.89	+0.7
2,909,049	-		LRK54_RS13015	0.89	+0.4
2,909,676	+		LRK54_RS13020	0.83	-0.3
2,909,676	+		LRK54_RS13020	0.83	+0.1
2,909,676	+		LRK54_RS13020	0.83	-0.3
2,909,676	+		LRK54_RS13020	0.83	-0.3
2,909,676	+		LRK54_RS13020	0.83	-0.9
2,909,676	+		LRK54_RS13020	0.83	-0.3
2,909,676	+		LRK54_RS13020	0.83	+1.0
2,909,677	-		LRK54_RS13020	0.83	+0.6
2,909,677	-		LRK54_RS13020	0.83	-0.6
2,909,677	-		LRK54_RS13020	0.83	+0.9
2,909,677	-		LRK54_RS13020	0.83	+0.2
2,909,677	-		LRK54_RS13020	0.83	+1.7
2,909,677	-		LRK54_RS13020	0.83	-0.3
2,909,677	-		LRK54_RS13020	0.83	-0.3
2,909,677	-		LRK54_RS13020	0.83	-1.3
2,909,677	-		LRK54_RS13020	0.83	+1.0
2,909,677	-		LRK54_RS13020	0.83	-2.1
2,909,677	-		LRK54_RS13020	0.83	-1.5
2,909,805	+				-0.4
2,909,805	+				+0.3
2,909,805	+				-1.9
2,909,805	+				-1.0
2,909,806	-				-0.4
2,909,806	-				-0.5
2,909,806	-				-0.1
2,909,806	-				+1.1
2,909,806	-				-0.1
2,909,870	+		LRK54_RS13025	0.38	+0.3
2,909,871	-		LRK54_RS13025	0.39	-0.0
2,909,871	-		LRK54_RS13025	0.39	-0.1
2,909,928	+		LRK54_RS13025	0.71	-0.7
2,909,929	-		LRK54_RS13025	0.72	-0.1
2,909,929	-		LRK54_RS13025	0.72	-0.0
2,909,929	-		LRK54_RS13025	0.72	+0.9
2,909,929	-		LRK54_RS13025	0.72	+0.4
2,909,929	-		LRK54_RS13025	0.72	+1.1
2,909,929	-		LRK54_RS13025	0.72	-0.6
2,909,929	-		LRK54_RS13025	0.72	-0.8
2,910,077	+				-0.1
2,910,077	+				+0.2
2,910,077	+				-2.2
2,910,077	+				+0.7
2,910,077	+				-0.3
2,910,077	+				-0.8
2,910,077	+				-1.9
2,910,078	-				+2.3
2,910,078	-				+0.5
2,910,078	-				-0.2
2,910,078	-				-0.5
2,910,078	-				-0.0
2,910,078	-				-1.0
2,910,078	-				-1.8
2,910,233	+		LRK54_RS13030	0.50	+0.7
2,910,233	+		LRK54_RS13030	0.50	-0.5
2,910,233	+		LRK54_RS13030	0.50	-1.0
2,910,233	+		LRK54_RS13030	0.50	-0.3
2,910,233	+		LRK54_RS13030	0.50	+1.0
2,910,233	+		LRK54_RS13030	0.50	+0.3
2,910,233	+		LRK54_RS13030	0.50	+0.6
2,910,233	+		LRK54_RS13030	0.50	-1.6
2,910,233	+		LRK54_RS13030	0.50	-2.0
2,910,233	+		LRK54_RS13030	0.50	+0.7
2,910,233	+		LRK54_RS13030	0.50	+0.3
2,910,233	+		LRK54_RS13030	0.50	-0.4
2,910,233	+		LRK54_RS13030	0.50	+1.4
2,910,233	+		LRK54_RS13030	0.50	-1.1
2,910,233	+		LRK54_RS13030	0.50	-1.1
2,910,233	+		LRK54_RS13030	0.50	-0.6
2,910,233	+		LRK54_RS13030	0.50	-0.2
2,910,233	+		LRK54_RS13030	0.50	-1.8
2,910,233	+		LRK54_RS13030	0.50	-0.5
2,910,233	+		LRK54_RS13030	0.50	-0.9
2,910,233	+		LRK54_RS13030	0.50	-0.2
2,910,233	+		LRK54_RS13030	0.50	+1.0
2,910,233	+		LRK54_RS13030	0.50	+1.2
2,910,233	+		LRK54_RS13030	0.50	+1.7
2,910,233	+		LRK54_RS13030	0.50	-1.2
2,910,233	+		LRK54_RS13030	0.50	-1.2
2,910,233	+		LRK54_RS13030	0.50	-1.3
2,910,234	-		LRK54_RS13030	0.51	+1.7
2,910,234	-		LRK54_RS13030	0.51	-1.1
2,910,234	-		LRK54_RS13030	0.51	-2.5
2,910,234	-		LRK54_RS13030	0.51	+0.5
2,910,234	-		LRK54_RS13030	0.51	+0.4
2,910,234	-		LRK54_RS13030	0.51	+0.4
2,910,234	-		LRK54_RS13030	0.51	-0.2
2,910,234	-		LRK54_RS13030	0.51	+0.7
2,910,234	-		LRK54_RS13030	0.51	-1.0
2,910,234	-		LRK54_RS13030	0.51	-0.1
2,910,234	-		LRK54_RS13030	0.51	-0.1
2,910,234	-		LRK54_RS13030	0.51	-1.4
2,910,234	-		LRK54_RS13030	0.51	+0.2
2,910,234	-		LRK54_RS13030	0.51	-1.9
2,910,234	-		LRK54_RS13030	0.51	-0.5
2,910,234	-		LRK54_RS13030	0.51	+0.7
2,910,234	-		LRK54_RS13030	0.51	+0.3
2,910,234	-		LRK54_RS13030	0.51	+0.2
2,910,234	-		LRK54_RS13030	0.51	+0.7
2,910,234	-		LRK54_RS13030	0.51	-2.2
2,910,234	-		LRK54_RS13030	0.51	+0.9
2,910,234	-		LRK54_RS13030	0.51	+0.1
2,910,234	-		LRK54_RS13030	0.51	-0.5
2,910,234	-		LRK54_RS13030	0.51	+1.8
2,910,234	-		LRK54_RS13030	0.51	-0.9