Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS12820

Experiment: R2A with sulfate 250 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with sulfate 250 mM
2,869,299	+		LRK54_RS12815	0.29	+0.1
2,869,582	+		LRK54_RS12815	0.50	+0.4
2,869,695	+		LRK54_RS12815	0.58	+3.3
2,869,695	+		LRK54_RS12815	0.58	-0.8
2,869,695	+		LRK54_RS12815	0.58	-0.4
2,869,695	+		LRK54_RS12815	0.58	+0.0
2,869,695	+		LRK54_RS12815	0.58	-1.6
2,869,696	-		LRK54_RS12815	0.58	+0.2
2,869,696	-		LRK54_RS12815	0.58	+0.4
2,869,696	-		LRK54_RS12815	0.58	-1.3
2,869,696	-		LRK54_RS12815	0.58	-0.4
2,869,696	-		LRK54_RS12815	0.58	+0.0
2,869,696	-		LRK54_RS12815	0.58	-1.6
2,869,767	+		LRK54_RS12815	0.63	-1.9
2,869,767	+		LRK54_RS12815	0.63	+1.7
2,869,767	+		LRK54_RS12815	0.63	-0.3
2,869,767	+		LRK54_RS12815	0.63	+1.7
2,869,767	+		LRK54_RS12815	0.63	-1.1
2,869,767	+		LRK54_RS12815	0.63	-0.3
2,869,767	+		LRK54_RS12815	0.63	+0.5
2,869,767	+		LRK54_RS12815	0.63	+0.6
2,869,768	-		LRK54_RS12815	0.63	-0.3
2,869,768	-		LRK54_RS12815	0.63	+0.7
2,869,768	-		LRK54_RS12815	0.63	+1.4
2,869,785	+		LRK54_RS12815	0.65	+1.7
2,869,785	+		LRK54_RS12815	0.65	-1.6
2,869,785	+		LRK54_RS12815	0.65	+0.0
2,869,785	+		LRK54_RS12815	0.65	-0.8
2,869,786	-		LRK54_RS12815	0.65	+0.1
2,869,786	-		LRK54_RS12815	0.65	-0.0
2,869,786	-		LRK54_RS12815	0.65	-1.1
2,869,786	-		LRK54_RS12815	0.65	+0.3
2,869,786	-		LRK54_RS12815	0.65	-0.6
2,869,786	-		LRK54_RS12815	0.65	-0.5
2,869,786	-		LRK54_RS12815	0.65	+0.7
2,869,812	+		LRK54_RS12815	0.67	-1.5
2,869,812	+		LRK54_RS12815	0.67	+0.9
2,869,812	+		LRK54_RS12815	0.67	-1.2
2,869,812	+		LRK54_RS12815	0.67	+0.1
2,869,812	+		LRK54_RS12815	0.67	-0.3
2,869,812	+		LRK54_RS12815	0.67	-0.4
2,869,813	-		LRK54_RS12815	0.67	-0.5
2,869,813	-		LRK54_RS12815	0.67	+0.1
2,869,813	-		LRK54_RS12815	0.67	-0.7
2,869,813	-		LRK54_RS12815	0.67	-0.9
2,869,896	+		LRK54_RS12815	0.73	+0.1
2,869,896	+		LRK54_RS12815	0.73	+0.1
2,869,896	+		LRK54_RS12815	0.73	+0.1
2,869,896	+		LRK54_RS12815	0.73	-0.1
2,869,896	+		LRK54_RS12815	0.73	+0.4
2,869,897	-		LRK54_RS12815	0.73	+1.7
2,869,897	-		LRK54_RS12815	0.73	-0.3
2,869,897	-		LRK54_RS12815	0.73	-0.2
2,869,897	-		LRK54_RS12815	0.73	+0.6
2,869,897	-		LRK54_RS12815	0.73	-1.9
2,869,897	-		LRK54_RS12815	0.73	+1.0
2,869,897	-		LRK54_RS12815	0.73	+0.4
2,869,897	-		LRK54_RS12815	0.73	-0.3
2,869,897	-		LRK54_RS12815	0.73	-0.3
2,869,897	-		LRK54_RS12815	0.73	-0.7
2,869,897	-		LRK54_RS12815	0.73	+0.5
2,869,897	-		LRK54_RS12815	0.73	-0.3
2,869,929	+		LRK54_RS12815	0.75	+2.8
2,869,929	+		LRK54_RS12815	0.75	+0.7
2,869,929	+		LRK54_RS12815	0.75	-0.6
2,869,929	+		LRK54_RS12815	0.75	-0.5
2,869,929	+		LRK54_RS12815	0.75	-1.3
2,869,929	+		LRK54_RS12815	0.75	+0.7
2,869,929	+		LRK54_RS12815	0.75	-0.1
2,869,929	+		LRK54_RS12815	0.75	-0.0
2,869,929	+		LRK54_RS12815	0.75	-0.5
2,869,929	+		LRK54_RS12815	0.75	+0.3
2,869,930	-		LRK54_RS12815	0.75	-0.8
2,869,930	-		LRK54_RS12815	0.75	-1.5
2,869,930	-		LRK54_RS12815	0.75	+0.5
2,869,930	-		LRK54_RS12815	0.75	+0.6
2,869,930	-		LRK54_RS12815	0.75	-0.2
2,869,930	-		LRK54_RS12815	0.75	+0.9
2,869,930	-		LRK54_RS12815	0.75	+0.2
2,869,930	-		LRK54_RS12815	0.75	+0.9
2,869,930	-		LRK54_RS12815	0.75	-0.6
2,869,930	-		LRK54_RS12815	0.75	-1.7
2,869,977	+		LRK54_RS12815	0.79	-0.5
2,869,978	-		LRK54_RS12815	0.79	+0.1
2,869,978	-		LRK54_RS12815	0.79	-2.6
2,870,085	+		LRK54_RS12815	0.87	-0.2
2,870,085	+		LRK54_RS12815	0.87	-0.1
2,870,085	+		LRK54_RS12815	0.87	+0.5
2,870,085	+		LRK54_RS12815	0.87	-0.6
2,870,086	-		LRK54_RS12815	0.87	+0.5
2,870,086	-		LRK54_RS12815	0.87	-1.0
2,870,086	-		LRK54_RS12815	0.87	+2.3
2,870,086	-		LRK54_RS12815	0.87	-0.4
2,870,086	-		LRK54_RS12815	0.87	+0.8
2,870,086	-		LRK54_RS12815	0.87	-0.5
2,870,086	-		LRK54_RS12815	0.87	+0.7
2,870,086	-		LRK54_RS12815	0.87	-0.2
2,870,086	-		LRK54_RS12815	0.87	-0.1
2,870,086	-		LRK54_RS12815	0.87	+0.1
2,870,097	+		LRK54_RS12815	0.88	-2.7
2,870,098	-		LRK54_RS12815	0.88	-0.3
2,870,098	-		LRK54_RS12815	0.88	-0.6
2,870,098	-		LRK54_RS12815	0.88	-0.8
2,870,121	+		LRK54_RS12815	0.89	-0.9
2,870,122	-		LRK54_RS12815	0.89	-0.2
2,870,122	-		LRK54_RS12815	0.89	-1.9
2,870,175	+				-0.5
2,870,175	+				+0.1
2,870,175	+				+0.6
2,870,175	+				-2.0
2,870,175	+				+0.6
2,870,175	+				+0.1
2,870,175	+				-0.9
2,870,175	+				-0.0
2,870,175	+				+0.1
2,870,175	+				-0.4
2,870,175	+				-0.5
2,870,175	+				+0.1
2,870,175	+				+0.7
2,870,175	+				-0.3
2,870,175	+				-0.5
2,870,175	+				-0.4
2,870,175	+				+0.1
2,870,175	+				-1.6
2,870,175	+				-0.2
2,870,175	+				+0.7
2,870,176	-				+0.7
2,870,176	-				-1.4
2,870,176	-				-1.1
2,870,176	-				+1.9
2,870,176	-				+2.0
2,870,176	-				-0.3
2,870,176	-				+0.3
2,870,176	-				-0.8
2,870,176	-				+0.7
2,870,176	-				-0.1
2,870,176	-				-0.5
2,870,176	-				-1.1
2,870,176	-				-0.7
2,870,176	-				-0.5
2,870,176	-				-0.2
2,870,176	-				+0.5
2,870,176	-				-0.3
2,870,176	-				-0.4
2,870,176	-				-0.7
2,870,199	+				-0.9
2,870,199	+				-0.1
2,870,199	+				-0.3
2,870,199	+				+0.5
2,870,200	-				-0.3
2,870,205	+				+1.1
2,870,205	+				-0.1
2,870,205	+				-0.4
2,870,205	+				-0.2
2,870,205	+				-0.2
2,870,205	+				+0.2
2,870,205	+				+0.0
2,870,205	+				+0.2
2,870,205	+				-0.3
2,870,205	+				+1.1
2,870,205	+				+0.7
2,870,205	+				+0.8
2,870,205	+				+1.7
2,870,205	+				+0.2
2,870,205	+				-1.2
2,870,205	+				+0.5
2,870,205	+				-1.4
2,870,205	+				-1.3
2,870,206	-				-0.6
2,870,206	-				+1.1
2,870,206	-				-3.7
2,870,206	-				+1.3
2,870,206	-				+0.7
2,870,206	-				-0.0
2,870,206	-				-0.1
2,870,206	-				-3.6
2,870,206	-				+0.0
2,870,206	-				-0.7
2,870,209	+				+1.6
2,870,209	+				-2.4
2,870,209	+				-0.3
2,870,209	+				-0.3
2,870,209	+				+0.4
2,870,209	+				+0.5
2,870,209	+				-0.6
2,870,209	+				-0.3
2,870,209	+				-0.3
2,870,209	+				-0.3
2,870,210	-				-0.2
2,870,210	-				-0.6
2,870,210	-				-0.9
2,870,210	-				-0.0
2,870,210	-				-0.6
2,870,210	-				-0.9
2,870,210	-				+0.5
2,870,210	-				-0.3
2,870,210	-				-1.6
2,870,246	+				+0.9
2,870,983	+				-1.3
2,870,983	+				-0.8
2,870,984	-				-1.1
2,870,996	+				+3.3
2,870,996	+				-0.3
2,870,996	+				+0.3
2,870,996	+				-0.1
2,870,996	+				-0.2
2,870,996	+				-0.3
2,870,996	+				-0.9
2,870,996	+				-0.9
2,870,996	+				-0.1
2,870,996	+				-0.5
2,870,996	+				+0.7
2,870,997	-				-1.1
2,870,997	-				-0.3
2,870,997	-				-1.3
2,870,997	-				-0.0
2,870,997	-				-2.2
2,870,997	-				+0.3
2,871,038	+				-0.6
2,871,038	+				-0.4
2,871,038	+				-0.6
2,871,038	+				-0.2
2,871,038	+				-0.3
2,871,038	+				+0.7
2,871,038	+				+0.7
2,871,038	+				-2.6
2,871,038	+				-1.5
2,871,038	+				-0.1
2,871,038	+				-0.3
2,871,038	+				+0.4
2,871,038	+				-0.9
2,871,038	+				-0.4
2,871,038	+				+0.7
2,871,038	+				+0.5
2,871,038	+				+0.1
2,871,038	+				-0.5
2,871,039	-				+0.1
2,871,039	-				+0.3
2,871,039	-				-0.6
2,871,039	-				+1.2
2,871,039	-				-0.9
2,871,039	-				-0.1
2,871,039	-				-0.7
2,871,039	-				+0.0
2,871,039	-				+0.8
2,871,039	-				-0.5
2,871,039	-				-2.0
2,871,051	+				-2.4
2,871,051	+				-0.8
2,871,051	+				+1.0
2,871,051	+				+0.1
2,871,051	+				+1.2
2,871,051	+				+2.7
2,871,051	+				-0.3
2,871,051	+				-0.7
2,871,051	+				-0.4
2,871,051	+				+0.5
2,871,051	+				+1.1
2,871,051	+				-1.8
2,871,051	+				+0.6
2,871,051	+				+0.8
2,871,052	-				-1.3
2,871,052	-				-2.1
2,871,052	-				+0.1
2,871,052	-				+0.4
2,871,052	-				+1.4
2,871,052	-				+0.2
2,871,052	-				-0.9
2,871,052	-				-0.4
2,871,052	-				+2.3
2,871,057	+				-0.3
2,871,057	+				+0.7
2,871,058	-				-0.7
2,871,075	+				+1.1
2,871,075	+				-1.0
2,871,075	+				-0.1
2,871,075	+				+0.9
2,871,075	+				+1.1
2,871,076	-				+0.9
2,871,076	-				-2.5
2,871,076	-				-0.2
2,871,076	-				+0.9
2,871,076	-				-0.9
2,871,076	-				-0.9
2,871,076	-				-0.8
2,871,076	-				-0.5
2,871,121	+				-0.8
2,871,122	-				+0.3
2,871,122	-				-0.3
2,871,122	-				+1.1
2,871,122	-				+0.4
2,871,393	+		LRK54_RS12825	0.53	-1.1
2,871,393	+		LRK54_RS12825	0.53	+1.2
2,871,393	+		LRK54_RS12825	0.53	-0.8
2,871,393	+		LRK54_RS12825	0.53	-0.6
2,871,393	+		LRK54_RS12825	0.53	+0.1
2,871,393	+		LRK54_RS12825	0.53	+0.2
2,871,393	+		LRK54_RS12825	0.53	-0.9
2,871,393	+		LRK54_RS12825	0.53	+0.4
2,871,393	+		LRK54_RS12825	0.53	+0.5
2,871,393	+		LRK54_RS12825	0.53	-2.5
2,871,394	-		LRK54_RS12825	0.53	-1.3
2,871,394	-		LRK54_RS12825	0.53	-0.7
2,871,394	-		LRK54_RS12825	0.53	+2.7
2,871,394	-		LRK54_RS12825	0.53	-2.0
2,871,394	-		LRK54_RS12825	0.53	+0.5
2,871,394	-		LRK54_RS12825	0.53	+1.3
2,871,394	-		LRK54_RS12825	0.53	-1.5
2,871,394	-		LRK54_RS12825	0.53	+0.7
2,871,394	-		LRK54_RS12825	0.53	-1.1
2,871,394	-		LRK54_RS12825	0.53	-0.7
2,871,448	+		LRK54_RS12825	0.70	+1.7
2,871,448	+		LRK54_RS12825	0.70	-0.6
2,871,448	+		LRK54_RS12825	0.70	-0.3
2,871,448	+		LRK54_RS12825	0.70	+0.7
2,871,449	-		LRK54_RS12825	0.70	+0.9
2,871,449	-		LRK54_RS12825	0.70	+1.5
2,871,540	+				+0.4
2,871,541	-				+2.3
2,871,599	+				-0.6
2,871,599	+				+0.2
2,871,599	+				-1.1
2,871,599	+				-0.1
2,871,599	+				-0.6
2,871,599	+				+0.7
2,871,599	+				-1.3
2,871,600	-				-2.1
2,871,600	-				+1.7
2,871,600	-				-0.0
2,871,600	-				-0.4
2,871,600	-				-0.9
2,871,600	-				-1.9
2,871,600	-				-0.2