Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3762

Experiment: Benzalkonium Chloride 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_3760 and Ga0059261_3761 are separated by 28 nucleotidesGa0059261_3761 and Ga0059261_3762 are separated by 7 nucleotidesGa0059261_3762 and Ga0059261_3763 are separated by 91 nucleotidesGa0059261_3763 and Ga0059261_3764 are separated by 9 nucleotides Ga0059261_3760: Ga0059261_3760 - hypothetical protein, at 3,861,128 to 3,861,403 _3760 Ga0059261_3761: Ga0059261_3761 - hypothetical protein, at 3,861,432 to 3,862,337 _3761 Ga0059261_3762: Ga0059261_3762 - Uncharacterized conserved protein, at 3,862,345 to 3,862,812 _3762 Ga0059261_3763: Ga0059261_3763 - Esterase/lipase, at 3,862,904 to 3,863,764 _3763 Ga0059261_3764: Ga0059261_3764 - Bacterial lipocalin, at 3,863,774 to 3,864,334 _3764 Position (kb) 3862 3863Strain fitness (log2 ratio) -2 -1 0 1 2at 3861.402 kb on - strandat 3861.402 kb on - strandat 3861.402 kb on - strandat 3861.402 kb on - strandat 3861.459 kb on + strandat 3861.459 kb on + strandat 3861.651 kb on + strand, within Ga0059261_3761at 3861.651 kb on + strand, within Ga0059261_3761at 3861.651 kb on + strand, within Ga0059261_3761at 3861.651 kb on + strand, within Ga0059261_3761at 3861.651 kb on + strand, within Ga0059261_3761at 3861.652 kb on - strand, within Ga0059261_3761at 3861.652 kb on - strand, within Ga0059261_3761at 3861.756 kb on + strand, within Ga0059261_3761at 3861.909 kb on + strand, within Ga0059261_3761at 3861.909 kb on + strand, within Ga0059261_3761at 3861.909 kb on + strand, within Ga0059261_3761at 3861.909 kb on + strand, within Ga0059261_3761at 3861.909 kb on + strand, within Ga0059261_3761at 3861.909 kb on + strand, within Ga0059261_3761at 3861.909 kb on + strand, within Ga0059261_3761at 3861.910 kb on - strand, within Ga0059261_3761at 3861.910 kb on - strand, within Ga0059261_3761at 3861.910 kb on - strand, within Ga0059261_3761at 3861.910 kb on - strand, within Ga0059261_3761at 3861.910 kb on - strand, within Ga0059261_3761at 3861.910 kb on - strand, within Ga0059261_3761at 3861.910 kb on - strand, within Ga0059261_3761at 3861.911 kb on + strand, within Ga0059261_3761at 3861.911 kb on + strand, within Ga0059261_3761at 3861.911 kb on + strand, within Ga0059261_3761at 3861.911 kb on + strand, within Ga0059261_3761at 3861.911 kb on + strand, within Ga0059261_3761at 3861.911 kb on + strand, within Ga0059261_3761at 3861.911 kb on + strand, within Ga0059261_3761at 3861.912 kb on - strand, within Ga0059261_3761at 3861.912 kb on - strand, within Ga0059261_3761at 3861.912 kb on - strand, within Ga0059261_3761at 3861.912 kb on - strand, within Ga0059261_3761at 3861.912 kb on - strand, within Ga0059261_3761at 3861.912 kb on - strand, within Ga0059261_3761at 3861.912 kb on - strand, within Ga0059261_3761at 3862.185 kb on + strand, within Ga0059261_3761at 3862.185 kb on + strand, within Ga0059261_3761at 3862.185 kb on + strand, within Ga0059261_3761at 3862.186 kb on - strand, within Ga0059261_3761at 3862.186 kb on - strand, within Ga0059261_3761at 3862.257 kb on + strandat 3862.257 kb on + strandat 3862.257 kb on + strandat 3862.257 kb on + strandat 3862.257 kb on + strandat 3862.257 kb on + strandat 3862.257 kb on + strandat 3862.257 kb on + strandat 3862.257 kb on + strandat 3862.257 kb on + strandat 3862.258 kb on - strandat 3862.258 kb on - strandat 3862.258 kb on - strandat 3862.258 kb on - strandat 3862.258 kb on - strandat 3862.258 kb on - strandat 3862.258 kb on - strandat 3862.263 kb on + strandat 3862.264 kb on - strandat 3862.346 kb on + strandat 3862.347 kb on - strandat 3862.347 kb on - strandat 3862.559 kb on + strand, within Ga0059261_3762at 3862.560 kb on - strand, within Ga0059261_3762at 3862.560 kb on - strand, within Ga0059261_3762at 3862.560 kb on - strand, within Ga0059261_3762at 3862.560 kb on - strand, within Ga0059261_3762at 3862.562 kb on + strand, within Ga0059261_3762at 3862.562 kb on + strand, within Ga0059261_3762at 3862.563 kb on - strand, within Ga0059261_3762at 3862.563 kb on - strand, within Ga0059261_3762at 3862.601 kb on - strand, within Ga0059261_3762at 3862.834 kb on + strandat 3862.834 kb on + strandat 3862.834 kb on + strandat 3862.835 kb on - strandat 3862.835 kb on - strandat 3862.835 kb on - strandat 3862.870 kb on + strandat 3862.871 kb on - strandat 3862.871 kb on - strandat 3862.871 kb on - strandat 3863.186 kb on + strand, within Ga0059261_3763at 3863.187 kb on - strand, within Ga0059261_3763at 3863.357 kb on + strand, within Ga0059261_3763at 3863.357 kb on + strand, within Ga0059261_3763at 3863.357 kb on + strand, within Ga0059261_3763at 3863.358 kb on - strand, within Ga0059261_3763at 3863.358 kb on - strand, within Ga0059261_3763at 3863.358 kb on - strand, within Ga0059261_3763at 3863.358 kb on - strand, within Ga0059261_3763at 3863.358 kb on - strand, within Ga0059261_3763at 3863.423 kb on + strand, within Ga0059261_3763at 3863.423 kb on + strand, within Ga0059261_3763at 3863.423 kb on + strand, within Ga0059261_3763at 3863.424 kb on - strand, within Ga0059261_3763at 3863.474 kb on + strand, within Ga0059261_3763at 3863.474 kb on + strand, within Ga0059261_3763at 3863.474 kb on + strand, within Ga0059261_3763at 3863.474 kb on + strand, within Ga0059261_3763at 3863.474 kb on + strand, within Ga0059261_3763at 3863.474 kb on + strand, within Ga0059261_3763at 3863.475 kb on - strand, within Ga0059261_3763at 3863.475 kb on - strandat 3863.475 kb on - strand, within Ga0059261_3763at 3863.475 kb on - strand, within Ga0059261_3763at 3863.475 kb on - strand, within Ga0059261_3763at 3863.475 kb on - strand, within Ga0059261_3763at 3863.476 kb on + strand, within Ga0059261_3763at 3863.477 kb on - strand, within Ga0059261_3763at 3863.683 kb on + strandat 3863.683 kb on + strandat 3863.683 kb on + strandat 3863.683 kb on + strandat 3863.717 kb on + strandat 3863.718 kb on - strandat 3863.811 kb on + strandat 3863.811 kb on + strandat 3863.812 kb on - strandat 3863.812 kb on - strandat 3863.812 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.0005 mg/ml
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3,861,402 - -0.1
3,861,402 - -0.3
3,861,402 - -0.0
3,861,402 - -1.1
3,861,459 + -0.9
3,861,459 + +0.1
3,861,651 + Ga0059261_3761 0.24 -0.5
3,861,651 + Ga0059261_3761 0.24 -0.5
3,861,651 + Ga0059261_3761 0.24 -0.0
3,861,651 + Ga0059261_3761 0.24 +0.9
3,861,651 + Ga0059261_3761 0.24 +0.4
3,861,652 - Ga0059261_3761 0.24 +0.6
3,861,652 - Ga0059261_3761 0.24 -0.4
3,861,756 + Ga0059261_3761 0.36 +0.1
3,861,909 + Ga0059261_3761 0.53 -0.2
3,861,909 + Ga0059261_3761 0.53 -0.3
3,861,909 + Ga0059261_3761 0.53 +0.3
3,861,909 + Ga0059261_3761 0.53 -0.1
3,861,909 + Ga0059261_3761 0.53 +0.1
3,861,909 + Ga0059261_3761 0.53 -1.0
3,861,909 + Ga0059261_3761 0.53 -0.4
3,861,910 - Ga0059261_3761 0.53 -0.3
3,861,910 - Ga0059261_3761 0.53 -0.6
3,861,910 - Ga0059261_3761 0.53 +0.0
3,861,910 - Ga0059261_3761 0.53 +0.5
3,861,910 - Ga0059261_3761 0.53 -1.1
3,861,910 - Ga0059261_3761 0.53 +0.2
3,861,910 - Ga0059261_3761 0.53 +0.9
3,861,911 + Ga0059261_3761 0.53 +1.4
3,861,911 + Ga0059261_3761 0.53 +0.3
3,861,911 + Ga0059261_3761 0.53 +0.9
3,861,911 + Ga0059261_3761 0.53 -0.7
3,861,911 + Ga0059261_3761 0.53 -0.3
3,861,911 + Ga0059261_3761 0.53 +1.4
3,861,911 + Ga0059261_3761 0.53 +0.7
3,861,912 - Ga0059261_3761 0.53 +0.6
3,861,912 - Ga0059261_3761 0.53 +0.7
3,861,912 - Ga0059261_3761 0.53 -0.2
3,861,912 - Ga0059261_3761 0.53 -1.4
3,861,912 - Ga0059261_3761 0.53 -0.2
3,861,912 - Ga0059261_3761 0.53 +1.3
3,861,912 - Ga0059261_3761 0.53 -0.2
3,862,185 + Ga0059261_3761 0.83 +0.2
3,862,185 + Ga0059261_3761 0.83 -0.1
3,862,185 + Ga0059261_3761 0.83 -0.0
3,862,186 - Ga0059261_3761 0.83 -0.4
3,862,186 - Ga0059261_3761 0.83 -1.0
3,862,257 + -1.4
3,862,257 + +0.0
3,862,257 + +0.3
3,862,257 + +0.2
3,862,257 + +0.3
3,862,257 + -0.1
3,862,257 + +0.1
3,862,257 + +0.3
3,862,257 + +0.1
3,862,257 + +0.5
3,862,258 - -0.4
3,862,258 - +0.1
3,862,258 - +0.8
3,862,258 - -0.0
3,862,258 - +0.7
3,862,258 - -0.5
3,862,258 - -0.2
3,862,263 + -0.2
3,862,264 - +0.6
3,862,346 + +0.4
3,862,347 - +0.2
3,862,347 - -0.2
3,862,559 + Ga0059261_3762 0.46 -1.1
3,862,560 - Ga0059261_3762 0.46 +0.6
3,862,560 - Ga0059261_3762 0.46 -0.2
3,862,560 - Ga0059261_3762 0.46 +0.1
3,862,560 - Ga0059261_3762 0.46 +1.1
3,862,562 + Ga0059261_3762 0.46 +0.6
3,862,562 + Ga0059261_3762 0.46 -0.4
3,862,563 - Ga0059261_3762 0.47 +0.3
3,862,563 - Ga0059261_3762 0.47 +0.6
3,862,601 - Ga0059261_3762 0.55 -0.3
3,862,834 + +0.2
3,862,834 + +0.0
3,862,834 + -0.2
3,862,835 - -0.3
3,862,835 - +0.1
3,862,835 - -0.1
3,862,870 + +0.0
3,862,871 - -0.1
3,862,871 - +0.4
3,862,871 - +0.1
3,863,186 + Ga0059261_3763 0.33 -0.9
3,863,187 - Ga0059261_3763 0.33 -0.1
3,863,357 + Ga0059261_3763 0.53 -0.3
3,863,357 + Ga0059261_3763 0.53 -0.5
3,863,357 + Ga0059261_3763 0.53 +0.1
3,863,358 - Ga0059261_3763 0.53 +0.7
3,863,358 - Ga0059261_3763 0.53 -0.0
3,863,358 - Ga0059261_3763 0.53 +0.6
3,863,358 - Ga0059261_3763 0.53 -0.1
3,863,358 - Ga0059261_3763 0.53 -0.9
3,863,423 + Ga0059261_3763 0.60 +0.9
3,863,423 + Ga0059261_3763 0.60 +0.4
3,863,423 + Ga0059261_3763 0.60 -0.0
3,863,424 - Ga0059261_3763 0.60 -0.4
3,863,474 + Ga0059261_3763 0.66 +0.2
3,863,474 + Ga0059261_3763 0.66 +0.1
3,863,474 + Ga0059261_3763 0.66 +0.4
3,863,474 + Ga0059261_3763 0.66 +0.6
3,863,474 + Ga0059261_3763 0.66 +1.3
3,863,474 + Ga0059261_3763 0.66 +1.1
3,863,475 - Ga0059261_3763 0.66 +0.2
3,863,475 - +1.9
3,863,475 - Ga0059261_3763 0.66 -0.5
3,863,475 - Ga0059261_3763 0.66 -0.2
3,863,475 - Ga0059261_3763 0.66 +0.1
3,863,475 - Ga0059261_3763 0.66 -1.1
3,863,476 + Ga0059261_3763 0.66 -0.2
3,863,477 - Ga0059261_3763 0.67 -0.0
3,863,683 + +0.0
3,863,683 + -2.0
3,863,683 + +1.0
3,863,683 + -0.2
3,863,717 + +0.9
3,863,718 - -0.3
3,863,811 + +0.0
3,863,811 + +0.3
3,863,812 - -0.4
3,863,812 - -0.2
3,863,812 - -0.1

Or see this region's nucleotide sequence