Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3566

Experiment: Benzalkonium Chloride 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_3564 and Ga0059261_3565 are separated by 323 nucleotidesGa0059261_3565 and Ga0059261_3566 overlap by 47 nucleotidesGa0059261_3566 and Ga0059261_3567 overlap by 4 nucleotidesGa0059261_3567 and Ga0059261_3568 are separated by 140 nucleotides Ga0059261_3564: Ga0059261_3564 - Uncharacterized conserved protein, at 3,692,001 to 3,692,456 _3564 Ga0059261_3565: Ga0059261_3565 - hypothetical protein, at 3,692,780 to 3,692,962 _3565 Ga0059261_3566: Ga0059261_3566 - hypothetical protein, at 3,692,916 to 3,693,569 _3566 Ga0059261_3567: Ga0059261_3567 - hypothetical protein, at 3,693,566 to 3,694,351 _3567 Ga0059261_3568: Ga0059261_3568 - hypothetical protein, at 3,694,492 to 3,695,481 _3568 Position (kb) 3692 3693 3694Strain fitness (log2 ratio) -2 -1 0 1 2at 3691.922 kb on + strandat 3691.922 kb on + strandat 3691.923 kb on - strandat 3691.923 kb on - strandat 3691.923 kb on - strandat 3691.976 kb on + strandat 3691.976 kb on + strandat 3691.976 kb on + strandat 3691.977 kb on - strandat 3691.977 kb on - strandat 3692.076 kb on + strand, within Ga0059261_3564at 3692.076 kb on + strand, within Ga0059261_3564at 3692.151 kb on + strand, within Ga0059261_3564at 3692.151 kb on + strand, within Ga0059261_3564at 3692.151 kb on + strand, within Ga0059261_3564at 3692.152 kb on - strand, within Ga0059261_3564at 3692.152 kb on - strand, within Ga0059261_3564at 3692.152 kb on - strand, within Ga0059261_3564at 3692.152 kb on - strand, within Ga0059261_3564at 3692.307 kb on + strand, within Ga0059261_3564at 3692.307 kb on + strand, within Ga0059261_3564at 3692.320 kb on + strand, within Ga0059261_3564at 3692.320 kb on + strand, within Ga0059261_3564at 3692.320 kb on + strand, within Ga0059261_3564at 3692.320 kb on + strand, within Ga0059261_3564at 3692.321 kb on - strand, within Ga0059261_3564at 3692.321 kb on - strand, within Ga0059261_3564at 3692.321 kb on - strand, within Ga0059261_3564at 3692.321 kb on - strand, within Ga0059261_3564at 3692.321 kb on - strand, within Ga0059261_3564at 3692.321 kb on - strand, within Ga0059261_3564at 3692.486 kb on + strandat 3692.487 kb on - strandat 3692.554 kb on + strandat 3692.600 kb on + strandat 3692.601 kb on - strandat 3692.601 kb on - strandat 3693.143 kb on + strand, within Ga0059261_3566at 3693.143 kb on + strand, within Ga0059261_3566at 3693.144 kb on - strand, within Ga0059261_3566at 3693.144 kb on - strand, within Ga0059261_3566at 3693.144 kb on - strand, within Ga0059261_3566at 3693.385 kb on + strand, within Ga0059261_3566at 3693.386 kb on - strand, within Ga0059261_3566at 3693.421 kb on - strand, within Ga0059261_3566at 3693.557 kb on + strandat 3693.557 kb on + strandat 3693.557 kb on + strandat 3693.557 kb on + strandat 3693.557 kb on + strandat 3693.558 kb on - strandat 3693.558 kb on - strandat 3693.558 kb on - strandat 3693.641 kb on - strandat 3693.762 kb on - strand, within Ga0059261_3567at 3693.762 kb on - strand, within Ga0059261_3567at 3693.762 kb on - strand, within Ga0059261_3567at 3693.790 kb on + strand, within Ga0059261_3567at 3693.790 kb on + strand, within Ga0059261_3567at 3693.790 kb on + strand, within Ga0059261_3567at 3693.793 kb on + strand, within Ga0059261_3567at 3693.793 kb on + strand, within Ga0059261_3567at 3693.793 kb on + strand, within Ga0059261_3567at 3693.793 kb on + strand, within Ga0059261_3567at 3693.793 kb on + strand, within Ga0059261_3567at 3693.793 kb on + strand, within Ga0059261_3567at 3693.793 kb on + strand, within Ga0059261_3567at 3693.793 kb on + strand, within Ga0059261_3567at 3693.794 kb on - strand, within Ga0059261_3567at 3693.794 kb on - strand, within Ga0059261_3567at 3693.815 kb on + strand, within Ga0059261_3567at 3693.815 kb on + strand, within Ga0059261_3567at 3693.815 kb on + strand, within Ga0059261_3567at 3693.815 kb on + strand, within Ga0059261_3567at 3693.815 kb on + strand, within Ga0059261_3567at 3693.815 kb on + strand, within Ga0059261_3567at 3693.816 kb on - strand, within Ga0059261_3567at 3693.816 kb on - strand, within Ga0059261_3567at 3693.816 kb on - strand, within Ga0059261_3567at 3693.816 kb on - strand, within Ga0059261_3567at 3693.816 kb on - strand, within Ga0059261_3567at 3693.816 kb on - strand, within Ga0059261_3567at 3693.816 kb on - strand, within Ga0059261_3567at 3693.817 kb on + strand, within Ga0059261_3567at 3693.817 kb on + strand, within Ga0059261_3567at 3693.818 kb on - strand, within Ga0059261_3567at 3693.818 kb on - strand, within Ga0059261_3567at 3694.165 kb on - strand, within Ga0059261_3567at 3694.193 kb on + strand, within Ga0059261_3567at 3694.193 kb on + strand, within Ga0059261_3567at 3694.194 kb on - strand, within Ga0059261_3567at 3694.194 kb on - strand, within Ga0059261_3567at 3694.194 kb on - strand, within Ga0059261_3567at 3694.194 kb on - strand, within Ga0059261_3567at 3694.355 kb on + strandat 3694.394 kb on + strandat 3694.395 kb on - strandat 3694.395 kb on - strandat 3694.401 kb on + strandat 3694.442 kb on - strandat 3694.452 kb on + strandat 3694.452 kb on + strandat 3694.453 kb on - strandat 3694.453 kb on - strandat 3694.470 kb on + strandat 3694.470 kb on + strandat 3694.471 kb on - strandat 3694.501 kb on + strandat 3694.501 kb on + strandat 3694.501 kb on + strandat 3694.501 kb on + strandat 3694.502 kb on - strandat 3694.502 kb on - strandat 3694.502 kb on - strandat 3694.502 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.0005 mg/ml
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3,691,922 + -0.5
3,691,922 + +0.1
3,691,923 - +1.0
3,691,923 - +0.3
3,691,923 - -0.4
3,691,976 + +0.6
3,691,976 + +0.1
3,691,976 + -1.9
3,691,977 - -0.2
3,691,977 - -0.2
3,692,076 + Ga0059261_3564 0.16 -0.1
3,692,076 + Ga0059261_3564 0.16 +0.1
3,692,151 + Ga0059261_3564 0.33 -1.0
3,692,151 + Ga0059261_3564 0.33 -0.5
3,692,151 + Ga0059261_3564 0.33 -0.5
3,692,152 - Ga0059261_3564 0.33 -0.2
3,692,152 - Ga0059261_3564 0.33 +0.1
3,692,152 - Ga0059261_3564 0.33 +0.4
3,692,152 - Ga0059261_3564 0.33 -0.6
3,692,307 + Ga0059261_3564 0.67 -0.3
3,692,307 + Ga0059261_3564 0.67 +0.8
3,692,320 + Ga0059261_3564 0.70 +0.1
3,692,320 + Ga0059261_3564 0.70 +0.3
3,692,320 + Ga0059261_3564 0.70 +0.4
3,692,320 + Ga0059261_3564 0.70 +0.5
3,692,321 - Ga0059261_3564 0.70 -0.2
3,692,321 - Ga0059261_3564 0.70 +0.0
3,692,321 - Ga0059261_3564 0.70 +0.6
3,692,321 - Ga0059261_3564 0.70 -0.1
3,692,321 - Ga0059261_3564 0.70 -0.2
3,692,321 - Ga0059261_3564 0.70 +0.4
3,692,486 + -0.5
3,692,487 - -0.5
3,692,554 + +0.3
3,692,600 + +0.7
3,692,601 - +0.4
3,692,601 - +0.3
3,693,143 + Ga0059261_3566 0.35 +0.8
3,693,143 + Ga0059261_3566 0.35 +1.4
3,693,144 - Ga0059261_3566 0.35 +0.9
3,693,144 - Ga0059261_3566 0.35 +0.4
3,693,144 - Ga0059261_3566 0.35 -0.0
3,693,385 + Ga0059261_3566 0.72 +0.0
3,693,386 - Ga0059261_3566 0.72 -0.3
3,693,421 - Ga0059261_3566 0.77 -0.9
3,693,557 + +0.0
3,693,557 + +0.5
3,693,557 + +0.3
3,693,557 + -0.5
3,693,557 + +0.4
3,693,558 - -0.3
3,693,558 - +0.2
3,693,558 - -0.3
3,693,641 - -0.6
3,693,762 - Ga0059261_3567 0.25 -0.8
3,693,762 - Ga0059261_3567 0.25 +0.2
3,693,762 - Ga0059261_3567 0.25 +0.1
3,693,790 + Ga0059261_3567 0.28 -0.3
3,693,790 + Ga0059261_3567 0.28 +0.5
3,693,790 + Ga0059261_3567 0.28 +0.1
3,693,793 + Ga0059261_3567 0.29 +0.8
3,693,793 + Ga0059261_3567 0.29 +0.2
3,693,793 + Ga0059261_3567 0.29 +0.2
3,693,793 + Ga0059261_3567 0.29 -0.7
3,693,793 + Ga0059261_3567 0.29 +0.5
3,693,793 + Ga0059261_3567 0.29 -0.3
3,693,793 + Ga0059261_3567 0.29 +0.1
3,693,793 + Ga0059261_3567 0.29 +0.5
3,693,794 - Ga0059261_3567 0.29 +0.2
3,693,794 - Ga0059261_3567 0.29 +0.6
3,693,815 + Ga0059261_3567 0.32 -0.8
3,693,815 + Ga0059261_3567 0.32 -0.2
3,693,815 + Ga0059261_3567 0.32 +0.5
3,693,815 + Ga0059261_3567 0.32 -0.3
3,693,815 + Ga0059261_3567 0.32 +0.0
3,693,815 + Ga0059261_3567 0.32 -0.3
3,693,816 - Ga0059261_3567 0.32 -0.2
3,693,816 - Ga0059261_3567 0.32 +0.7
3,693,816 - Ga0059261_3567 0.32 -0.2
3,693,816 - Ga0059261_3567 0.32 +0.1
3,693,816 - Ga0059261_3567 0.32 +0.4
3,693,816 - Ga0059261_3567 0.32 +0.1
3,693,816 - Ga0059261_3567 0.32 -0.3
3,693,817 + Ga0059261_3567 0.32 -0.3
3,693,817 + Ga0059261_3567 0.32 +0.8
3,693,818 - Ga0059261_3567 0.32 +0.1
3,693,818 - Ga0059261_3567 0.32 +0.6
3,694,165 - Ga0059261_3567 0.76 -0.0
3,694,193 + Ga0059261_3567 0.80 -0.1
3,694,193 + Ga0059261_3567 0.80 +1.0
3,694,194 - Ga0059261_3567 0.80 -0.4
3,694,194 - Ga0059261_3567 0.80 +0.1
3,694,194 - Ga0059261_3567 0.80 -0.1
3,694,194 - Ga0059261_3567 0.80 -0.6
3,694,355 + -1.0
3,694,394 + -1.4
3,694,395 - +0.0
3,694,395 - +0.1
3,694,401 + -0.3
3,694,442 - +0.4
3,694,452 + +0.2
3,694,452 + -0.8
3,694,453 - -0.2
3,694,453 - +0.3
3,694,470 + +0.1
3,694,470 + +0.2
3,694,471 - +0.5
3,694,501 + +0.5
3,694,501 + -0.2
3,694,501 + -0.2
3,694,501 + +0.2
3,694,502 - +0.1
3,694,502 - +2.5
3,694,502 - +0.1
3,694,502 - +0.2

Or see this region's nucleotide sequence