Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3507

Experiment: Benzalkonium Chloride 0.0005 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGa0059261_3506 and Ga0059261_3507 are separated by 85 nucleotidesGa0059261_3507 and Ga0059261_3508 are separated by 39 nucleotides Ga0059261_3506: Ga0059261_3506 - Predicted permeases, at 3,628,330 to 3,629,529 _3506 Ga0059261_3507: Ga0059261_3507 - His Kinase A (phospho-acceptor) domain/Response regulator receiver domain/Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase/CHASE3 domain, at 3,629,615 to 3,631,579 _3507 Ga0059261_3508: Ga0059261_3508 - 7-keto-8-aminopelargonate synthetase and related enzymes, at 3,631,619 to 3,632,872 _3508 Position (kb) 3629 3630 3631 3632Strain fitness (log2 ratio) -2 -1 0 1 2at 3629.511 kb on - strandat 3629.593 kb on - strandat 3629.593 kb on - strandat 3629.593 kb on - strandat 3629.593 kb on - strandat 3629.593 kb on - strandat 3629.600 kb on - strandat 3629.617 kb on - strandat 3629.617 kb on - strandat 3629.712 kb on - strandat 3629.757 kb on + strandat 3629.769 kb on + strandat 3629.769 kb on + strandat 3629.769 kb on + strandat 3629.769 kb on + strandat 3629.769 kb on + strandat 3629.769 kb on + strandat 3629.769 kb on + strandat 3629.769 kb on + strandat 3629.769 kb on + strandat 3629.769 kb on + strandat 3629.770 kb on - strandat 3629.770 kb on - strandat 3629.770 kb on - strandat 3630.100 kb on + strand, within Ga0059261_3507at 3630.100 kb on + strand, within Ga0059261_3507at 3630.100 kb on + strand, within Ga0059261_3507at 3630.285 kb on + strand, within Ga0059261_3507at 3630.285 kb on + strand, within Ga0059261_3507at 3630.285 kb on + strand, within Ga0059261_3507at 3630.285 kb on + strand, within Ga0059261_3507at 3630.285 kb on + strand, within Ga0059261_3507at 3630.285 kb on + strand, within Ga0059261_3507at 3630.285 kb on + strand, within Ga0059261_3507at 3630.285 kb on + strand, within Ga0059261_3507at 3630.286 kb on - strand, within Ga0059261_3507at 3630.286 kb on - strand, within Ga0059261_3507at 3630.286 kb on - strand, within Ga0059261_3507at 3630.286 kb on - strand, within Ga0059261_3507at 3630.286 kb on - strand, within Ga0059261_3507at 3630.340 kb on + strand, within Ga0059261_3507at 3630.341 kb on - strand, within Ga0059261_3507at 3630.341 kb on - strand, within Ga0059261_3507at 3630.341 kb on - strand, within Ga0059261_3507at 3630.709 kb on + strand, within Ga0059261_3507at 3630.709 kb on + strand, within Ga0059261_3507at 3630.709 kb on + strand, within Ga0059261_3507at 3630.709 kb on + strand, within Ga0059261_3507at 3630.709 kb on + strand, within Ga0059261_3507at 3630.710 kb on - strand, within Ga0059261_3507at 3630.710 kb on - strand, within Ga0059261_3507at 3630.710 kb on - strand, within Ga0059261_3507at 3630.710 kb on - strand, within Ga0059261_3507at 3630.710 kb on - strand, within Ga0059261_3507at 3630.710 kb on - strand, within Ga0059261_3507at 3630.710 kb on - strand, within Ga0059261_3507at 3630.710 kb on - strand, within Ga0059261_3507at 3630.710 kb on - strand, within Ga0059261_3507at 3630.710 kb on - strand, within Ga0059261_3507at 3630.710 kb on - strand, within Ga0059261_3507at 3631.131 kb on + strand, within Ga0059261_3507at 3631.131 kb on + strand, within Ga0059261_3507at 3631.131 kb on + strand, within Ga0059261_3507at 3631.131 kb on + strand, within Ga0059261_3507at 3631.131 kb on + strand, within Ga0059261_3507at 3631.132 kb on - strand, within Ga0059261_3507at 3631.132 kb on - strand, within Ga0059261_3507at 3631.132 kb on - strand, within Ga0059261_3507at 3631.132 kb on - strand, within Ga0059261_3507at 3631.305 kb on + strand, within Ga0059261_3507at 3631.305 kb on + strand, within Ga0059261_3507at 3631.305 kb on + strand, within Ga0059261_3507at 3631.305 kb on + strand, within Ga0059261_3507at 3631.305 kb on + strand, within Ga0059261_3507at 3631.306 kb on - strand, within Ga0059261_3507at 3631.306 kb on - strand, within Ga0059261_3507at 3631.306 kb on - strand, within Ga0059261_3507at 3631.306 kb on - strand, within Ga0059261_3507at 3631.306 kb on - strand, within Ga0059261_3507at 3631.341 kb on + strandat 3631.342 kb on - strand, within Ga0059261_3507at 3631.342 kb on - strand, within Ga0059261_3507at 3631.342 kb on - strand, within Ga0059261_3507at 3631.342 kb on - strand, within Ga0059261_3507at 3631.342 kb on - strand, within Ga0059261_3507at 3631.410 kb on + strandat 3631.410 kb on + strandat 3631.411 kb on - strandat 3631.411 kb on - strandat 3631.411 kb on - strandat 3631.411 kb on - strandat 3631.411 kb on - strandat 3631.411 kb on - strandat 3631.567 kb on + strandat 3631.591 kb on + strandat 3631.591 kb on + strandat 3631.591 kb on + strandat 3631.592 kb on - strandat 3631.592 kb on - strandat 3631.592 kb on - strandat 3631.592 kb on - strandat 3631.620 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.0005 mg/ml
remove
3,629,511 - +0.5
3,629,593 - +0.2
3,629,593 - -0.7
3,629,593 - -0.4
3,629,593 - -1.9
3,629,593 - -0.6
3,629,600 - +0.6
3,629,617 - +0.1
3,629,617 - -0.9
3,629,712 - +1.8
3,629,757 + +0.8
3,629,769 + +0.3
3,629,769 + -0.8
3,629,769 + -0.2
3,629,769 + +0.5
3,629,769 + +0.3
3,629,769 + +0.7
3,629,769 + -0.5
3,629,769 + -0.2
3,629,769 + +0.6
3,629,769 + +0.0
3,629,770 - +0.5
3,629,770 - +0.4
3,629,770 - -0.2
3,630,100 + Ga0059261_3507 0.25 +0.2
3,630,100 + Ga0059261_3507 0.25 +0.4
3,630,100 + Ga0059261_3507 0.25 -0.6
3,630,285 + Ga0059261_3507 0.34 -0.4
3,630,285 + Ga0059261_3507 0.34 +0.3
3,630,285 + Ga0059261_3507 0.34 +0.6
3,630,285 + Ga0059261_3507 0.34 +0.4
3,630,285 + Ga0059261_3507 0.34 +0.4
3,630,285 + Ga0059261_3507 0.34 +0.1
3,630,285 + Ga0059261_3507 0.34 +0.6
3,630,285 + Ga0059261_3507 0.34 +1.5
3,630,286 - Ga0059261_3507 0.34 +1.2
3,630,286 - Ga0059261_3507 0.34 +0.6
3,630,286 - Ga0059261_3507 0.34 +0.4
3,630,286 - Ga0059261_3507 0.34 -0.1
3,630,286 - Ga0059261_3507 0.34 -0.7
3,630,340 + Ga0059261_3507 0.37 +0.6
3,630,341 - Ga0059261_3507 0.37 -0.1
3,630,341 - Ga0059261_3507 0.37 +0.5
3,630,341 - Ga0059261_3507 0.37 +0.6
3,630,709 + Ga0059261_3507 0.56 +0.6
3,630,709 + Ga0059261_3507 0.56 +0.3
3,630,709 + Ga0059261_3507 0.56 +0.3
3,630,709 + Ga0059261_3507 0.56 +0.8
3,630,709 + Ga0059261_3507 0.56 +0.5
3,630,710 - Ga0059261_3507 0.56 +0.2
3,630,710 - Ga0059261_3507 0.56 +0.4
3,630,710 - Ga0059261_3507 0.56 -1.5
3,630,710 - Ga0059261_3507 0.56 +0.7
3,630,710 - Ga0059261_3507 0.56 +0.2
3,630,710 - Ga0059261_3507 0.56 +0.2
3,630,710 - Ga0059261_3507 0.56 +0.1
3,630,710 - Ga0059261_3507 0.56 +0.3
3,630,710 - Ga0059261_3507 0.56 +0.5
3,630,710 - Ga0059261_3507 0.56 +0.2
3,630,710 - Ga0059261_3507 0.56 +0.2
3,631,131 + Ga0059261_3507 0.77 +0.2
3,631,131 + Ga0059261_3507 0.77 +0.3
3,631,131 + Ga0059261_3507 0.77 -0.1
3,631,131 + Ga0059261_3507 0.77 +0.2
3,631,131 + Ga0059261_3507 0.77 +0.1
3,631,132 - Ga0059261_3507 0.77 +0.6
3,631,132 - Ga0059261_3507 0.77 +0.3
3,631,132 - Ga0059261_3507 0.77 +0.6
3,631,132 - Ga0059261_3507 0.77 +0.4
3,631,305 + Ga0059261_3507 0.86 +0.4
3,631,305 + Ga0059261_3507 0.86 -1.0
3,631,305 + Ga0059261_3507 0.86 -0.3
3,631,305 + Ga0059261_3507 0.86 +0.1
3,631,305 + Ga0059261_3507 0.86 -0.0
3,631,306 - Ga0059261_3507 0.86 +0.2
3,631,306 - Ga0059261_3507 0.86 -1.0
3,631,306 - Ga0059261_3507 0.86 -0.0
3,631,306 - Ga0059261_3507 0.86 +0.2
3,631,306 - Ga0059261_3507 0.86 +0.3
3,631,341 + +0.9
3,631,342 - Ga0059261_3507 0.88 +0.4
3,631,342 - Ga0059261_3507 0.88 -0.5
3,631,342 - Ga0059261_3507 0.88 +0.2
3,631,342 - Ga0059261_3507 0.88 +1.1
3,631,342 - Ga0059261_3507 0.88 -0.0
3,631,410 + +0.2
3,631,410 + +0.2
3,631,411 - +0.5
3,631,411 - +0.2
3,631,411 - +0.8
3,631,411 - +0.3
3,631,411 - +0.0
3,631,411 - +1.2
3,631,567 + -0.1
3,631,591 + +0.4
3,631,591 + +0.4
3,631,591 + +0.9
3,631,592 - +0.3
3,631,592 - +0.8
3,631,592 - -0.0
3,631,592 - +1.3
3,631,620 + -0.1

Or see this region's nucleotide sequence