Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3244

Experiment: Benzalkonium Chloride 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_3243 and Ga0059261_3244 are separated by 1 nucleotidesGa0059261_3244 and Ga0059261_3245 are separated by 52 nucleotidesGa0059261_3245 and Ga0059261_3246 are separated by 49 nucleotides Ga0059261_3243: Ga0059261_3243 - Flp pilus assembly protein, secretin CpaC, at 3,376,804 to 3,378,435 _3243 Ga0059261_3244: Ga0059261_3244 - Flp pilus assembly protein CpaB, at 3,378,437 to 3,379,465 _3244 Ga0059261_3245: Ga0059261_3245 - Flp pilus assembly protein, protease CpaA, at 3,379,518 to 3,379,988 _3245 Ga0059261_3246: Ga0059261_3246 - Lysophospholipase, at 3,380,038 to 3,380,982 _3246 Position (kb) 3378 3379 3380Strain fitness (log2 ratio) -2 -1 0 1at 3377.705 kb on + strand, within Ga0059261_3243at 3377.705 kb on + strand, within Ga0059261_3243at 3377.706 kb on - strand, within Ga0059261_3243at 3377.706 kb on - strand, within Ga0059261_3243at 3377.706 kb on - strand, within Ga0059261_3243at 3377.706 kb on - strand, within Ga0059261_3243at 3377.760 kb on + strand, within Ga0059261_3243at 3378.018 kb on + strand, within Ga0059261_3243at 3378.137 kb on + strand, within Ga0059261_3243at 3378.137 kb on + strand, within Ga0059261_3243at 3378.137 kb on + strand, within Ga0059261_3243at 3378.137 kb on + strand, within Ga0059261_3243at 3378.137 kb on + strand, within Ga0059261_3243at 3378.137 kb on + strand, within Ga0059261_3243at 3378.138 kb on - strand, within Ga0059261_3243at 3378.138 kb on - strand, within Ga0059261_3243at 3378.167 kb on + strand, within Ga0059261_3243at 3378.466 kb on + strandat 3378.472 kb on - strandat 3378.529 kb on - strandat 3378.745 kb on + strand, within Ga0059261_3244at 3378.745 kb on + strand, within Ga0059261_3244at 3378.745 kb on + strand, within Ga0059261_3244at 3378.746 kb on - strand, within Ga0059261_3244at 3378.746 kb on - strand, within Ga0059261_3244at 3378.746 kb on - strand, within Ga0059261_3244at 3378.849 kb on + strand, within Ga0059261_3244at 3378.849 kb on + strand, within Ga0059261_3244at 3378.849 kb on + strand, within Ga0059261_3244at 3378.849 kb on + strand, within Ga0059261_3244at 3378.849 kb on + strand, within Ga0059261_3244at 3378.849 kb on + strand, within Ga0059261_3244at 3378.849 kb on + strand, within Ga0059261_3244at 3378.849 kb on + strand, within Ga0059261_3244at 3378.850 kb on - strand, within Ga0059261_3244at 3378.850 kb on - strand, within Ga0059261_3244at 3378.850 kb on - strand, within Ga0059261_3244at 3378.850 kb on - strand, within Ga0059261_3244at 3378.850 kb on - strand, within Ga0059261_3244at 3378.850 kb on - strand, within Ga0059261_3244at 3378.850 kb on - strand, within Ga0059261_3244at 3379.212 kb on + strand, within Ga0059261_3244at 3379.213 kb on - strand, within Ga0059261_3244at 3379.213 kb on - strand, within Ga0059261_3244at 3379.213 kb on - strand, within Ga0059261_3244at 3379.215 kb on + strand, within Ga0059261_3244at 3379.215 kb on + strand, within Ga0059261_3244at 3379.215 kb on + strand, within Ga0059261_3244at 3379.215 kb on + strand, within Ga0059261_3244at 3379.215 kb on + strand, within Ga0059261_3244at 3379.215 kb on + strand, within Ga0059261_3244at 3379.216 kb on - strand, within Ga0059261_3244at 3379.216 kb on - strand, within Ga0059261_3244at 3379.216 kb on - strand, within Ga0059261_3244at 3379.216 kb on - strand, within Ga0059261_3244at 3379.216 kb on - strand, within Ga0059261_3244at 3379.216 kb on - strand, within Ga0059261_3244at 3379.216 kb on - strand, within Ga0059261_3244at 3379.424 kb on - strandat 3379.424 kb on - strandat 3379.424 kb on - strandat 3379.424 kb on - strandat 3379.511 kb on + strandat 3379.511 kb on + strandat 3379.532 kb on + strandat 3379.532 kb on + strandat 3379.532 kb on + strandat 3379.995 kb on + strandat 3379.996 kb on - strandat 3379.996 kb on - strandat 3379.996 kb on - strandat 3380.003 kb on - strandat 3380.003 kb on - strandat 3380.026 kb on + strandat 3380.026 kb on + strandat 3380.027 kb on - strandat 3380.203 kb on + strand, within Ga0059261_3246at 3380.203 kb on + strand, within Ga0059261_3246at 3380.204 kb on - strand, within Ga0059261_3246at 3380.204 kb on - strand, within Ga0059261_3246at 3380.310 kb on + strand, within Ga0059261_3246at 3380.329 kb on + strand, within Ga0059261_3246at 3380.330 kb on - strand, within Ga0059261_3246at 3380.330 kb on - strand, within Ga0059261_3246at 3380.330 kb on - strand, within Ga0059261_3246at 3380.330 kb on - strand, within Ga0059261_3246at 3380.330 kb on - strand, within Ga0059261_3246at 3380.330 kb on - strand, within Ga0059261_3246at 3380.330 kb on - strand, within Ga0059261_3246at 3380.331 kb on + strand, within Ga0059261_3246

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.0005 mg/ml
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3,377,705 + Ga0059261_3243 0.55 +0.0
3,377,705 + Ga0059261_3243 0.55 +0.5
3,377,706 - Ga0059261_3243 0.55 +0.1
3,377,706 - Ga0059261_3243 0.55 +0.3
3,377,706 - Ga0059261_3243 0.55 -0.1
3,377,706 - Ga0059261_3243 0.55 -1.3
3,377,760 + Ga0059261_3243 0.59 +0.2
3,378,018 + Ga0059261_3243 0.74 +0.2
3,378,137 + Ga0059261_3243 0.82 +0.5
3,378,137 + Ga0059261_3243 0.82 +0.3
3,378,137 + Ga0059261_3243 0.82 +1.1
3,378,137 + Ga0059261_3243 0.82 -0.0
3,378,137 + Ga0059261_3243 0.82 -0.2
3,378,137 + Ga0059261_3243 0.82 -0.3
3,378,138 - Ga0059261_3243 0.82 +0.3
3,378,138 - Ga0059261_3243 0.82 -0.9
3,378,167 + Ga0059261_3243 0.84 -0.1
3,378,466 + +0.3
3,378,472 - +1.0
3,378,529 - -0.7
3,378,745 + Ga0059261_3244 0.30 -0.4
3,378,745 + Ga0059261_3244 0.30 +0.1
3,378,745 + Ga0059261_3244 0.30 -0.4
3,378,746 - Ga0059261_3244 0.30 +0.0
3,378,746 - Ga0059261_3244 0.30 +0.3
3,378,746 - Ga0059261_3244 0.30 +0.2
3,378,849 + Ga0059261_3244 0.40 +0.2
3,378,849 + Ga0059261_3244 0.40 +0.4
3,378,849 + Ga0059261_3244 0.40 +0.4
3,378,849 + Ga0059261_3244 0.40 -0.6
3,378,849 + Ga0059261_3244 0.40 +0.9
3,378,849 + Ga0059261_3244 0.40 -0.7
3,378,849 + Ga0059261_3244 0.40 -0.8
3,378,849 + Ga0059261_3244 0.40 -0.5
3,378,850 - Ga0059261_3244 0.40 -0.3
3,378,850 - Ga0059261_3244 0.40 +0.0
3,378,850 - Ga0059261_3244 0.40 +0.3
3,378,850 - Ga0059261_3244 0.40 -0.0
3,378,850 - Ga0059261_3244 0.40 -0.8
3,378,850 - Ga0059261_3244 0.40 -1.5
3,378,850 - Ga0059261_3244 0.40 -0.5
3,379,212 + Ga0059261_3244 0.75 -0.6
3,379,213 - Ga0059261_3244 0.75 -1.8
3,379,213 - Ga0059261_3244 0.75 -0.9
3,379,213 - Ga0059261_3244 0.75 +0.6
3,379,215 + Ga0059261_3244 0.76 -0.3
3,379,215 + Ga0059261_3244 0.76 -0.6
3,379,215 + Ga0059261_3244 0.76 -0.0
3,379,215 + Ga0059261_3244 0.76 -1.1
3,379,215 + Ga0059261_3244 0.76 +0.5
3,379,215 + Ga0059261_3244 0.76 +0.1
3,379,216 - Ga0059261_3244 0.76 -1.3
3,379,216 - Ga0059261_3244 0.76 -0.5
3,379,216 - Ga0059261_3244 0.76 -0.6
3,379,216 - Ga0059261_3244 0.76 -0.5
3,379,216 - Ga0059261_3244 0.76 -0.1
3,379,216 - Ga0059261_3244 0.76 -0.2
3,379,216 - Ga0059261_3244 0.76 -0.1
3,379,424 - +0.7
3,379,424 - +0.2
3,379,424 - -0.1
3,379,424 - -0.6
3,379,511 + -0.6
3,379,511 + +0.3
3,379,532 + -1.7
3,379,532 + +1.0
3,379,532 + +0.1
3,379,995 + -0.0
3,379,996 - -0.3
3,379,996 - -0.3
3,379,996 - -0.4
3,380,003 - -0.7
3,380,003 - -0.7
3,380,026 + -0.7
3,380,026 + -0.0
3,380,027 - -0.1
3,380,203 + Ga0059261_3246 0.17 -0.7
3,380,203 + Ga0059261_3246 0.17 -0.4
3,380,204 - Ga0059261_3246 0.18 -0.1
3,380,204 - Ga0059261_3246 0.18 -0.1
3,380,310 + Ga0059261_3246 0.29 -0.3
3,380,329 + Ga0059261_3246 0.31 +0.2
3,380,330 - Ga0059261_3246 0.31 -1.5
3,380,330 - Ga0059261_3246 0.31 +1.1
3,380,330 - Ga0059261_3246 0.31 -0.0
3,380,330 - Ga0059261_3246 0.31 +0.6
3,380,330 - Ga0059261_3246 0.31 -0.2
3,380,330 - Ga0059261_3246 0.31 +0.4
3,380,330 - Ga0059261_3246 0.31 -1.2
3,380,331 + Ga0059261_3246 0.31 -0.2

Or see this region's nucleotide sequence