Experiment: Benzalkonium Chloride 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_3243 and Ga0059261_3244 are separated by 1 nucleotides Ga0059261_3244 and Ga0059261_3245 are separated by 52 nucleotides Ga0059261_3245 and Ga0059261_3246 are separated by 49 nucleotides
Ga0059261_3243: Ga0059261_3243 - Flp pilus assembly protein, secretin CpaC, at 3,376,804 to 3,378,435
_3243
Ga0059261_3244: Ga0059261_3244 - Flp pilus assembly protein CpaB, at 3,378,437 to 3,379,465
_3244
Ga0059261_3245: Ga0059261_3245 - Flp pilus assembly protein, protease CpaA, at 3,379,518 to 3,379,988
_3245
Ga0059261_3246: Ga0059261_3246 - Lysophospholipase, at 3,380,038 to 3,380,982
_3246
Position (kb)
3378
3379
3380 Strain fitness (log2 ratio)
-2
-1
0
1 at 3377.705 kb on + strand, within Ga0059261_3243 at 3377.705 kb on + strand, within Ga0059261_3243 at 3377.706 kb on - strand, within Ga0059261_3243 at 3377.706 kb on - strand, within Ga0059261_3243 at 3377.706 kb on - strand, within Ga0059261_3243 at 3377.706 kb on - strand, within Ga0059261_3243 at 3377.760 kb on + strand, within Ga0059261_3243 at 3378.018 kb on + strand, within Ga0059261_3243 at 3378.137 kb on + strand, within Ga0059261_3243 at 3378.137 kb on + strand, within Ga0059261_3243 at 3378.137 kb on + strand, within Ga0059261_3243 at 3378.137 kb on + strand, within Ga0059261_3243 at 3378.137 kb on + strand, within Ga0059261_3243 at 3378.137 kb on + strand, within Ga0059261_3243 at 3378.138 kb on - strand, within Ga0059261_3243 at 3378.138 kb on - strand, within Ga0059261_3243 at 3378.167 kb on + strand, within Ga0059261_3243 at 3378.466 kb on + strand at 3378.472 kb on - strand at 3378.529 kb on - strand at 3378.745 kb on + strand, within Ga0059261_3244 at 3378.745 kb on + strand, within Ga0059261_3244 at 3378.745 kb on + strand, within Ga0059261_3244 at 3378.746 kb on - strand, within Ga0059261_3244 at 3378.746 kb on - strand, within Ga0059261_3244 at 3378.746 kb on - strand, within Ga0059261_3244 at 3378.849 kb on + strand, within Ga0059261_3244 at 3378.849 kb on + strand, within Ga0059261_3244 at 3378.849 kb on + strand, within Ga0059261_3244 at 3378.849 kb on + strand, within Ga0059261_3244 at 3378.849 kb on + strand, within Ga0059261_3244 at 3378.849 kb on + strand, within Ga0059261_3244 at 3378.849 kb on + strand, within Ga0059261_3244 at 3378.849 kb on + strand, within Ga0059261_3244 at 3378.850 kb on - strand, within Ga0059261_3244 at 3378.850 kb on - strand, within Ga0059261_3244 at 3378.850 kb on - strand, within Ga0059261_3244 at 3378.850 kb on - strand, within Ga0059261_3244 at 3378.850 kb on - strand, within Ga0059261_3244 at 3378.850 kb on - strand, within Ga0059261_3244 at 3378.850 kb on - strand, within Ga0059261_3244 at 3379.212 kb on + strand, within Ga0059261_3244 at 3379.213 kb on - strand, within Ga0059261_3244 at 3379.213 kb on - strand, within Ga0059261_3244 at 3379.213 kb on - strand, within Ga0059261_3244 at 3379.215 kb on + strand, within Ga0059261_3244 at 3379.215 kb on + strand, within Ga0059261_3244 at 3379.215 kb on + strand, within Ga0059261_3244 at 3379.215 kb on + strand, within Ga0059261_3244 at 3379.215 kb on + strand, within Ga0059261_3244 at 3379.215 kb on + strand, within Ga0059261_3244 at 3379.216 kb on - strand, within Ga0059261_3244 at 3379.216 kb on - strand, within Ga0059261_3244 at 3379.216 kb on - strand, within Ga0059261_3244 at 3379.216 kb on - strand, within Ga0059261_3244 at 3379.216 kb on - strand, within Ga0059261_3244 at 3379.216 kb on - strand, within Ga0059261_3244 at 3379.216 kb on - strand, within Ga0059261_3244 at 3379.424 kb on - strand at 3379.424 kb on - strand at 3379.424 kb on - strand at 3379.424 kb on - strand at 3379.511 kb on + strand at 3379.511 kb on + strand at 3379.532 kb on + strand at 3379.532 kb on + strand at 3379.532 kb on + strand at 3379.995 kb on + strand at 3379.996 kb on - strand at 3379.996 kb on - strand at 3379.996 kb on - strand at 3380.003 kb on - strand at 3380.003 kb on - strand at 3380.026 kb on + strand at 3380.026 kb on + strand at 3380.027 kb on - strand at 3380.203 kb on + strand, within Ga0059261_3246 at 3380.203 kb on + strand, within Ga0059261_3246 at 3380.204 kb on - strand, within Ga0059261_3246 at 3380.204 kb on - strand, within Ga0059261_3246 at 3380.310 kb on + strand, within Ga0059261_3246 at 3380.329 kb on + strand, within Ga0059261_3246 at 3380.330 kb on - strand, within Ga0059261_3246 at 3380.330 kb on - strand, within Ga0059261_3246 at 3380.330 kb on - strand, within Ga0059261_3246 at 3380.330 kb on - strand, within Ga0059261_3246 at 3380.330 kb on - strand, within Ga0059261_3246 at 3380.330 kb on - strand, within Ga0059261_3246 at 3380.330 kb on - strand, within Ga0059261_3246 at 3380.331 kb on + strand, within Ga0059261_3246
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.0005 mg/ml remove 3,377,705 + Ga0059261_3243 0.55 +0.0 3,377,705 + Ga0059261_3243 0.55 +0.5 3,377,706 - Ga0059261_3243 0.55 +0.1 3,377,706 - Ga0059261_3243 0.55 +0.3 3,377,706 - Ga0059261_3243 0.55 -0.1 3,377,706 - Ga0059261_3243 0.55 -1.3 3,377,760 + Ga0059261_3243 0.59 +0.2 3,378,018 + Ga0059261_3243 0.74 +0.2 3,378,137 + Ga0059261_3243 0.82 +0.5 3,378,137 + Ga0059261_3243 0.82 +0.3 3,378,137 + Ga0059261_3243 0.82 +1.1 3,378,137 + Ga0059261_3243 0.82 -0.0 3,378,137 + Ga0059261_3243 0.82 -0.2 3,378,137 + Ga0059261_3243 0.82 -0.3 3,378,138 - Ga0059261_3243 0.82 +0.3 3,378,138 - Ga0059261_3243 0.82 -0.9 3,378,167 + Ga0059261_3243 0.84 -0.1 3,378,466 + +0.3 3,378,472 - +1.0 3,378,529 - -0.7 3,378,745 + Ga0059261_3244 0.30 -0.4 3,378,745 + Ga0059261_3244 0.30 +0.1 3,378,745 + Ga0059261_3244 0.30 -0.4 3,378,746 - Ga0059261_3244 0.30 +0.0 3,378,746 - Ga0059261_3244 0.30 +0.3 3,378,746 - Ga0059261_3244 0.30 +0.2 3,378,849 + Ga0059261_3244 0.40 +0.2 3,378,849 + Ga0059261_3244 0.40 +0.4 3,378,849 + Ga0059261_3244 0.40 +0.4 3,378,849 + Ga0059261_3244 0.40 -0.6 3,378,849 + Ga0059261_3244 0.40 +0.9 3,378,849 + Ga0059261_3244 0.40 -0.7 3,378,849 + Ga0059261_3244 0.40 -0.8 3,378,849 + Ga0059261_3244 0.40 -0.5 3,378,850 - Ga0059261_3244 0.40 -0.3 3,378,850 - Ga0059261_3244 0.40 +0.0 3,378,850 - Ga0059261_3244 0.40 +0.3 3,378,850 - Ga0059261_3244 0.40 -0.0 3,378,850 - Ga0059261_3244 0.40 -0.8 3,378,850 - Ga0059261_3244 0.40 -1.5 3,378,850 - Ga0059261_3244 0.40 -0.5 3,379,212 + Ga0059261_3244 0.75 -0.6 3,379,213 - Ga0059261_3244 0.75 -1.8 3,379,213 - Ga0059261_3244 0.75 -0.9 3,379,213 - Ga0059261_3244 0.75 +0.6 3,379,215 + Ga0059261_3244 0.76 -0.3 3,379,215 + Ga0059261_3244 0.76 -0.6 3,379,215 + Ga0059261_3244 0.76 -0.0 3,379,215 + Ga0059261_3244 0.76 -1.1 3,379,215 + Ga0059261_3244 0.76 +0.5 3,379,215 + Ga0059261_3244 0.76 +0.1 3,379,216 - Ga0059261_3244 0.76 -1.3 3,379,216 - Ga0059261_3244 0.76 -0.5 3,379,216 - Ga0059261_3244 0.76 -0.6 3,379,216 - Ga0059261_3244 0.76 -0.5 3,379,216 - Ga0059261_3244 0.76 -0.1 3,379,216 - Ga0059261_3244 0.76 -0.2 3,379,216 - Ga0059261_3244 0.76 -0.1 3,379,424 - +0.7 3,379,424 - +0.2 3,379,424 - -0.1 3,379,424 - -0.6 3,379,511 + -0.6 3,379,511 + +0.3 3,379,532 + -1.7 3,379,532 + +1.0 3,379,532 + +0.1 3,379,995 + -0.0 3,379,996 - -0.3 3,379,996 - -0.3 3,379,996 - -0.4 3,380,003 - -0.7 3,380,003 - -0.7 3,380,026 + -0.7 3,380,026 + -0.0 3,380,027 - -0.1 3,380,203 + Ga0059261_3246 0.17 -0.7 3,380,203 + Ga0059261_3246 0.17 -0.4 3,380,204 - Ga0059261_3246 0.18 -0.1 3,380,204 - Ga0059261_3246 0.18 -0.1 3,380,310 + Ga0059261_3246 0.29 -0.3 3,380,329 + Ga0059261_3246 0.31 +0.2 3,380,330 - Ga0059261_3246 0.31 -1.5 3,380,330 - Ga0059261_3246 0.31 +1.1 3,380,330 - Ga0059261_3246 0.31 -0.0 3,380,330 - Ga0059261_3246 0.31 +0.6 3,380,330 - Ga0059261_3246 0.31 -0.2 3,380,330 - Ga0059261_3246 0.31 +0.4 3,380,330 - Ga0059261_3246 0.31 -1.2 3,380,331 + Ga0059261_3246 0.31 -0.2
Or see this region's nucleotide sequence