Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0535

Experiment: Benzalkonium Chloride 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0534 and Ga0059261_0535 are separated by 63 nucleotidesGa0059261_0535 and Ga0059261_0536 are separated by 57 nucleotidesGa0059261_0536 and Ga0059261_0537 are separated by 50 nucleotides Ga0059261_0534: Ga0059261_0534 - TonB dependent receptor/Secretin and TonB N terminus short domain/TonB-dependent Receptor Plug Domain, at 536,348 to 539,530 _0534 Ga0059261_0535: Ga0059261_0535 - PAP2 superfamily, at 539,594 to 540,409 _0535 Ga0059261_0536: Ga0059261_0536 - transcriptional regulator, TetR family, at 540,467 to 541,063 _0536 Ga0059261_0537: Ga0059261_0537 - Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit, at 541,114 to 542,295 _0537 Position (kb) 539 540 541Strain fitness (log2 ratio) -2 -1 0 1 2at 538.756 kb on + strand, within Ga0059261_0534at 538.756 kb on + strand, within Ga0059261_0534at 538.756 kb on + strand, within Ga0059261_0534at 538.756 kb on + strandat 538.757 kb on - strand, within Ga0059261_0534at 538.757 kb on - strand, within Ga0059261_0534at 538.757 kb on - strandat 538.777 kb on - strand, within Ga0059261_0534at 538.821 kb on - strand, within Ga0059261_0534at 538.821 kb on - strand, within Ga0059261_0534at 538.821 kb on - strand, within Ga0059261_0534at 539.027 kb on + strand, within Ga0059261_0534at 539.087 kb on + strandat 539.088 kb on - strand, within Ga0059261_0534at 539.105 kb on + strand, within Ga0059261_0534at 539.105 kb on + strand, within Ga0059261_0534at 539.105 kb on + strand, within Ga0059261_0534at 539.106 kb on - strand, within Ga0059261_0534at 539.108 kb on + strand, within Ga0059261_0534at 539.108 kb on + strand, within Ga0059261_0534at 539.108 kb on + strand, within Ga0059261_0534at 539.109 kb on - strand, within Ga0059261_0534at 539.150 kb on + strand, within Ga0059261_0534at 539.150 kb on + strand, within Ga0059261_0534at 539.150 kb on + strand, within Ga0059261_0534at 539.151 kb on - strand, within Ga0059261_0534at 539.179 kb on + strand, within Ga0059261_0534at 539.179 kb on + strand, within Ga0059261_0534at 539.179 kb on + strand, within Ga0059261_0534at 539.240 kb on + strandat 539.240 kb on + strandat 539.240 kb on + strandat 539.240 kb on + strandat 539.241 kb on - strandat 539.242 kb on + strandat 539.242 kb on + strandat 539.242 kb on + strandat 539.243 kb on - strandat 539.318 kb on - strandat 539.318 kb on - strandat 539.318 kb on - strandat 539.318 kb on - strandat 539.346 kb on - strandat 539.361 kb on + strandat 539.361 kb on + strandat 539.361 kb on + strandat 539.361 kb on + strandat 539.362 kb on - strandat 539.362 kb on - strandat 539.362 kb on - strandat 539.362 kb on - strandat 539.391 kb on - strandat 539.391 kb on - strandat 539.391 kb on - strandat 539.480 kb on + strandat 539.480 kb on + strandat 539.481 kb on - strandat 539.481 kb on - strandat 539.481 kb on - strandat 539.481 kb on - strandat 539.481 kb on - strandat 539.498 kb on + strandat 539.504 kb on + strandat 539.709 kb on + strand, within Ga0059261_0535at 539.714 kb on + strand, within Ga0059261_0535at 539.714 kb on + strand, within Ga0059261_0535at 539.714 kb on + strand, within Ga0059261_0535at 539.715 kb on - strand, within Ga0059261_0535at 539.715 kb on - strand, within Ga0059261_0535at 539.715 kb on - strand, within Ga0059261_0535at 539.739 kb on - strand, within Ga0059261_0535at 539.873 kb on + strand, within Ga0059261_0535at 540.014 kb on + strand, within Ga0059261_0535at 540.023 kb on + strand, within Ga0059261_0535at 540.023 kb on + strand, within Ga0059261_0535at 540.024 kb on - strand, within Ga0059261_0535at 540.096 kb on - strand, within Ga0059261_0535at 540.116 kb on + strand, within Ga0059261_0535at 540.116 kb on + strand, within Ga0059261_0535at 540.116 kb on + strand, within Ga0059261_0535at 540.117 kb on - strand, within Ga0059261_0535at 540.117 kb on - strand, within Ga0059261_0535at 540.117 kb on - strand, within Ga0059261_0535at 540.117 kb on - strand, within Ga0059261_0535at 540.117 kb on - strand, within Ga0059261_0535at 540.194 kb on + strand, within Ga0059261_0535at 540.194 kb on + strand, within Ga0059261_0535at 540.194 kb on + strand, within Ga0059261_0535at 540.194 kb on + strand, within Ga0059261_0535at 540.194 kb on + strand, within Ga0059261_0535at 540.195 kb on - strand, within Ga0059261_0535at 540.222 kb on - strand, within Ga0059261_0535at 540.333 kb on - strandat 540.333 kb on - strandat 540.666 kb on + strand, within Ga0059261_0536at 540.666 kb on + strand, within Ga0059261_0536at 540.666 kb on + strand, within Ga0059261_0536at 540.667 kb on - strand, within Ga0059261_0536at 540.667 kb on - strand, within Ga0059261_0536at 540.667 kb on - strand, within Ga0059261_0536at 540.667 kb on - strand, within Ga0059261_0536at 540.667 kb on - strand, within Ga0059261_0536at 540.783 kb on + strand, within Ga0059261_0536at 540.783 kb on + strand, within Ga0059261_0536at 540.783 kb on + strand, within Ga0059261_0536at 540.784 kb on - strand, within Ga0059261_0536at 540.784 kb on - strand, within Ga0059261_0536at 540.784 kb on - strand, within Ga0059261_0536at 540.784 kb on - strand, within Ga0059261_0536at 540.784 kb on - strand, within Ga0059261_0536at 540.784 kb on - strand, within Ga0059261_0536at 540.784 kb on - strand, within Ga0059261_0536at 540.824 kb on + strand, within Ga0059261_0536at 540.870 kb on + strand, within Ga0059261_0536at 540.871 kb on - strand, within Ga0059261_0536at 540.871 kb on - strand, within Ga0059261_0536at 540.871 kb on - strand, within Ga0059261_0536at 540.871 kb on - strand, within Ga0059261_0536at 541.186 kb on + strandat 541.186 kb on + strandat 541.187 kb on - strandat 541.187 kb on - strandat 541.187 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.0005 mg/ml
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538,756 + Ga0059261_0534 0.76 +0.1
538,756 + Ga0059261_0534 0.76 -0.2
538,756 + Ga0059261_0534 0.76 +0.4
538,756 + +2.0
538,757 - Ga0059261_0534 0.76 +0.8
538,757 - Ga0059261_0534 0.76 +1.2
538,757 - +0.4
538,777 - Ga0059261_0534 0.76 -0.0
538,821 - Ga0059261_0534 0.78 +0.8
538,821 - Ga0059261_0534 0.78 +0.4
538,821 - Ga0059261_0534 0.78 -0.0
539,027 + Ga0059261_0534 0.84 +2.2
539,087 + +1.4
539,088 - Ga0059261_0534 0.86 +0.1
539,105 + Ga0059261_0534 0.87 -1.5
539,105 + Ga0059261_0534 0.87 -0.8
539,105 + Ga0059261_0534 0.87 +0.1
539,106 - Ga0059261_0534 0.87 -0.9
539,108 + Ga0059261_0534 0.87 -0.5
539,108 + Ga0059261_0534 0.87 +0.3
539,108 + Ga0059261_0534 0.87 +0.4
539,109 - Ga0059261_0534 0.87 -0.3
539,150 + Ga0059261_0534 0.88 -0.9
539,150 + Ga0059261_0534 0.88 +1.2
539,150 + Ga0059261_0534 0.88 -1.4
539,151 - Ga0059261_0534 0.88 -0.8
539,179 + Ga0059261_0534 0.89 -2.0
539,179 + Ga0059261_0534 0.89 -0.2
539,179 + Ga0059261_0534 0.89 +0.0
539,240 + +0.4
539,240 + +0.2
539,240 + -1.0
539,240 + -0.8
539,241 - +0.2
539,242 + -0.5
539,242 + +0.6
539,242 + +0.7
539,243 - +0.5
539,318 - +0.6
539,318 - +0.0
539,318 - -0.0
539,318 - -0.3
539,346 - -0.2
539,361 + +0.4
539,361 + +0.4
539,361 + +0.2
539,361 + -0.5
539,362 - +0.4
539,362 - +0.4
539,362 - +0.5
539,362 - -0.6
539,391 - +0.8
539,391 - +0.2
539,391 - +0.7
539,480 + -0.8
539,480 + -1.0
539,481 - +0.3
539,481 - +0.2
539,481 - +0.1
539,481 - +0.3
539,481 - +0.4
539,498 + +0.2
539,504 + +0.1
539,709 + Ga0059261_0535 0.14 -1.3
539,714 + Ga0059261_0535 0.15 -0.9
539,714 + Ga0059261_0535 0.15 -0.9
539,714 + Ga0059261_0535 0.15 +0.7
539,715 - Ga0059261_0535 0.15 +0.3
539,715 - Ga0059261_0535 0.15 -0.3
539,715 - Ga0059261_0535 0.15 +0.0
539,739 - Ga0059261_0535 0.18 -1.4
539,873 + Ga0059261_0535 0.34 -0.1
540,014 + Ga0059261_0535 0.51 -0.8
540,023 + Ga0059261_0535 0.53 -0.2
540,023 + Ga0059261_0535 0.53 +0.2
540,024 - Ga0059261_0535 0.53 -0.3
540,096 - Ga0059261_0535 0.62 +0.2
540,116 + Ga0059261_0535 0.64 -0.1
540,116 + Ga0059261_0535 0.64 +0.7
540,116 + Ga0059261_0535 0.64 +1.2
540,117 - Ga0059261_0535 0.64 -0.2
540,117 - Ga0059261_0535 0.64 -0.1
540,117 - Ga0059261_0535 0.64 -0.0
540,117 - Ga0059261_0535 0.64 -0.2
540,117 - Ga0059261_0535 0.64 -0.8
540,194 + Ga0059261_0535 0.74 +0.5
540,194 + Ga0059261_0535 0.74 -0.2
540,194 + Ga0059261_0535 0.74 -0.4
540,194 + Ga0059261_0535 0.74 +0.1
540,194 + Ga0059261_0535 0.74 +0.4
540,195 - Ga0059261_0535 0.74 +0.3
540,222 - Ga0059261_0535 0.77 -0.2
540,333 - -0.1
540,333 - -0.2
540,666 + Ga0059261_0536 0.33 +0.8
540,666 + Ga0059261_0536 0.33 +0.4
540,666 + Ga0059261_0536 0.33 +0.7
540,667 - Ga0059261_0536 0.34 +0.7
540,667 - Ga0059261_0536 0.34 -0.7
540,667 - Ga0059261_0536 0.34 +0.2
540,667 - Ga0059261_0536 0.34 -0.2
540,667 - Ga0059261_0536 0.34 +0.6
540,783 + Ga0059261_0536 0.53 -0.0
540,783 + Ga0059261_0536 0.53 -0.2
540,783 + Ga0059261_0536 0.53 +0.1
540,784 - Ga0059261_0536 0.53 -0.9
540,784 - Ga0059261_0536 0.53 +0.0
540,784 - Ga0059261_0536 0.53 -0.6
540,784 - Ga0059261_0536 0.53 +0.3
540,784 - Ga0059261_0536 0.53 +0.2
540,784 - Ga0059261_0536 0.53 -0.6
540,784 - Ga0059261_0536 0.53 +0.2
540,824 + Ga0059261_0536 0.60 -0.3
540,870 + Ga0059261_0536 0.68 -0.2
540,871 - Ga0059261_0536 0.68 +0.2
540,871 - Ga0059261_0536 0.68 -1.0
540,871 - Ga0059261_0536 0.68 -0.1
540,871 - Ga0059261_0536 0.68 -1.2
541,186 + -0.1
541,186 + -0.0
541,187 - +0.0
541,187 - +1.4
541,187 - +0.2

Or see this region's nucleotide sequence