Experiment: syringaldehyde 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_30015 and AO356_30020 are separated by 289 nucleotides AO356_30020 and AO356_30025 overlap by 4 nucleotides AO356_30025 and AO356_30030 are separated by 9 nucleotides
AO356_30015: AO356_30015 - histidine kinase, at 7,004,150 to 7,005,229
_30015
AO356_30020: AO356_30020 - hypothetical protein, at 7,005,519 to 7,006,031
_30020
AO356_30025: AO356_30025 - ferredoxin, at 7,006,028 to 7,006,957
_30025
AO356_30030: AO356_30030 - hypothetical protein, at 7,006,967 to 7,007,983
_30030
Position (kb) 7005
7006
7007 Strain fitness (log2 ratio) -2
-1
0
1 at 7004.678 kb on + strand, within AO356_30015 at 7004.678 kb on + strand, within AO356_30015 at 7004.738 kb on + strand, within AO356_30015 at 7004.738 kb on + strand, within AO356_30015 at 7004.804 kb on - strand, within AO356_30015 at 7005.332 kb on + strand at 7005.378 kb on + strand at 7005.379 kb on - strand at 7005.379 kb on - strand at 7005.392 kb on + strand at 7005.435 kb on - strand at 7005.751 kb on - strand, within AO356_30020 at 7005.865 kb on - strand, within AO356_30020 at 7005.865 kb on - strand, within AO356_30020 at 7005.865 kb on - strand, within AO356_30020 at 7005.865 kb on - strand, within AO356_30020 at 7006.191 kb on - strand, within AO356_30025 at 7006.275 kb on - strand, within AO356_30025 at 7006.451 kb on + strand, within AO356_30025 at 7006.452 kb on - strand, within AO356_30025 at 7006.481 kb on + strand, within AO356_30025 at 7006.481 kb on + strand, within AO356_30025 at 7006.481 kb on + strand, within AO356_30025 at 7006.955 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 5 mM remove 7,004,678 + AO356_30015 0.49 +1.4 7,004,678 + AO356_30015 0.49 -0.6 7,004,738 + AO356_30015 0.54 +0.7 7,004,738 + AO356_30015 0.54 +0.9 7,004,804 - AO356_30015 0.61 -0.7 7,005,332 + +1.0 7,005,378 + -0.3 7,005,379 - +1.1 7,005,379 - -0.1 7,005,392 + -0.4 7,005,435 - -0.1 7,005,751 - AO356_30020 0.45 +0.7 7,005,865 - AO356_30020 0.67 +0.5 7,005,865 - AO356_30020 0.67 +0.2 7,005,865 - AO356_30020 0.67 +0.3 7,005,865 - AO356_30020 0.67 -0.3 7,006,191 - AO356_30025 0.18 -0.1 7,006,275 - AO356_30025 0.27 -0.5 7,006,451 + AO356_30025 0.45 -1.9 7,006,452 - AO356_30025 0.46 -0.6 7,006,481 + AO356_30025 0.49 -0.2 7,006,481 + AO356_30025 0.49 -0.5 7,006,481 + AO356_30025 0.49 +0.9 7,006,955 + +0.1
Or see this region's nucleotide sequence