Experiment: syringaldehyde 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_29665 and AO356_29670 are separated by 294 nucleotides AO356_29670 and AO356_29675 are separated by 72 nucleotides AO356_29675 and AO356_29680 are separated by 10 nucleotides
AO356_29665: AO356_29665 - LysR family transcriptional regulator, at 6,900,823 to 6,901,788
_29665
AO356_29670: AO356_29670 - argininosuccinate lyase, at 6,902,083 to 6,903,510
_29670
AO356_29675: AO356_29675 - ABC transporter permease, at 6,903,583 to 6,904,461
_29675
AO356_29680: AO356_29680 - ectoine/hydroxyectoine ABC transporter ATP-binding protein EhuA, at 6,904,472 to 6,905,236
_29680
Position (kb)
6902
6903
6904 Strain fitness (log2 ratio)
-2
-1
0
1 at 6901.133 kb on + strand, within AO356_29665 at 6901.134 kb on - strand, within AO356_29665 at 6901.223 kb on + strand, within AO356_29665 at 6901.224 kb on - strand, within AO356_29665 at 6901.233 kb on - strand, within AO356_29665 at 6901.260 kb on - strand, within AO356_29665 at 6901.501 kb on + strand, within AO356_29665 at 6901.502 kb on - strand, within AO356_29665 at 6901.502 kb on - strand, within AO356_29665 at 6901.582 kb on - strand, within AO356_29665 at 6901.799 kb on + strand at 6902.302 kb on + strand, within AO356_29670 at 6902.468 kb on + strand, within AO356_29670 at 6902.469 kb on - strand, within AO356_29670 at 6902.469 kb on - strand, within AO356_29670 at 6902.469 kb on - strand, within AO356_29670 at 6902.839 kb on - strand, within AO356_29670 at 6902.839 kb on - strand, within AO356_29670 at 6902.839 kb on - strand, within AO356_29670 at 6903.025 kb on - strand, within AO356_29670 at 6903.044 kb on - strand, within AO356_29670 at 6903.101 kb on + strand, within AO356_29670 at 6903.655 kb on + strand at 6903.767 kb on - strand, within AO356_29675 at 6903.925 kb on + strand, within AO356_29675 at 6903.926 kb on - strand, within AO356_29675 at 6903.926 kb on - strand, within AO356_29675 at 6903.928 kb on - strand, within AO356_29675 at 6904.096 kb on + strand, within AO356_29675 at 6904.227 kb on + strand, within AO356_29675 at 6904.504 kb on + strand at 6904.508 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 5 mM remove 6,901,133 + AO356_29665 0.32 -1.5 6,901,134 - AO356_29665 0.32 +0.0 6,901,223 + AO356_29665 0.41 +1.1 6,901,224 - AO356_29665 0.42 -0.3 6,901,233 - AO356_29665 0.42 -0.5 6,901,260 - AO356_29665 0.45 +1.0 6,901,501 + AO356_29665 0.70 -0.7 6,901,502 - AO356_29665 0.70 -0.2 6,901,502 - AO356_29665 0.70 -0.3 6,901,582 - AO356_29665 0.79 +1.0 6,901,799 + +0.2 6,902,302 + AO356_29670 0.15 -0.2 6,902,468 + AO356_29670 0.27 -2.5 6,902,469 - AO356_29670 0.27 +0.4 6,902,469 - AO356_29670 0.27 +0.5 6,902,469 - AO356_29670 0.27 +0.3 6,902,839 - AO356_29670 0.53 -0.6 6,902,839 - AO356_29670 0.53 +0.3 6,902,839 - AO356_29670 0.53 +0.7 6,903,025 - AO356_29670 0.66 +0.8 6,903,044 - AO356_29670 0.67 -0.0 6,903,101 + AO356_29670 0.71 -0.2 6,903,655 + +0.3 6,903,767 - AO356_29675 0.21 -0.1 6,903,925 + AO356_29675 0.39 +1.2 6,903,926 - AO356_29675 0.39 +1.5 6,903,926 - AO356_29675 0.39 +0.9 6,903,928 - AO356_29675 0.39 +0.4 6,904,096 + AO356_29675 0.58 +0.2 6,904,227 + AO356_29675 0.73 +0.6 6,904,504 + -0.0 6,904,508 + -0.0
Or see this region's nucleotide sequence