Experiment: syringaldehyde 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_29085 and AO356_29090 are separated by 20 nucleotides AO356_29090 and AO356_29095 overlap by 4 nucleotides AO356_29095 and AO356_29100 overlap by 14 nucleotides AO356_29100 and AO356_29105 overlap by 10 nucleotides
AO356_29085: AO356_29085 - LysR family transcriptional regulator, at 6,763,056 to 6,763,982
_29085
AO356_29090: AO356_29090 - GntR family transcriptional regulator, at 6,764,003 to 6,764,734
_29090
AO356_29095: AO356_29095 - cyclase, at 6,764,731 to 6,765,516
_29095
AO356_29100: AO356_29100 - epimerase, at 6,765,503 to 6,766,510
_29100
AO356_29105: AO356_29105 - fumarylacetoacetate hydrolase, at 6,766,501 to 6,767,493
_29105
Position (kb) 6764
6765
6766 Strain fitness (log2 ratio) -1
0
1 at 6763.739 kb on + strand, within AO356_29085 at 6763.739 kb on + strand, within AO356_29085 at 6763.740 kb on - strand, within AO356_29085 at 6764.006 kb on + strand at 6764.037 kb on + strand at 6764.241 kb on + strand, within AO356_29090 at 6764.939 kb on + strand, within AO356_29095 at 6765.005 kb on + strand, within AO356_29095 at 6765.006 kb on - strand, within AO356_29095 at 6765.006 kb on - strand, within AO356_29095 at 6765.013 kb on - strand, within AO356_29095 at 6765.013 kb on - strand, within AO356_29095 at 6765.276 kb on - strand, within AO356_29095 at 6765.294 kb on + strand, within AO356_29095 at 6765.295 kb on - strand, within AO356_29095 at 6765.301 kb on - strand, within AO356_29095 at 6765.458 kb on + strand at 6765.587 kb on + strand at 6766.078 kb on - strand, within AO356_29100 at 6766.246 kb on - strand, within AO356_29100
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 5 mM remove 6,763,739 + AO356_29085 0.74 -0.6 6,763,739 + AO356_29085 0.74 -0.9 6,763,740 - AO356_29085 0.74 -0.4 6,764,006 + +0.0 6,764,037 + -0.7 6,764,241 + AO356_29090 0.33 -0.9 6,764,939 + AO356_29095 0.26 +0.9 6,765,005 + AO356_29095 0.35 +0.7 6,765,006 - AO356_29095 0.35 +0.9 6,765,006 - AO356_29095 0.35 +0.4 6,765,013 - AO356_29095 0.36 -0.4 6,765,013 - AO356_29095 0.36 -0.0 6,765,276 - AO356_29095 0.69 +0.5 6,765,294 + AO356_29095 0.72 +0.4 6,765,295 - AO356_29095 0.72 -0.4 6,765,301 - AO356_29095 0.73 -0.1 6,765,458 + -0.4 6,765,587 + +0.6 6,766,078 - AO356_29100 0.57 -0.2 6,766,246 - AO356_29100 0.74 -0.2
Or see this region's nucleotide sequence