Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_28780

Experiment: syringaldehyde 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_28770 and AO356_28775 are separated by 110 nucleotidesAO356_28775 and AO356_28780 are separated by 26 nucleotidesAO356_28780 and AO356_28785 are separated by 608 nucleotides AO356_28770: AO356_28770 - energy transducer TonB, at 6,689,149 to 6,691,371 _28770 AO356_28775: AO356_28775 - transcriptional regulator, at 6,691,482 to 6,691,886 _28775 AO356_28780: AO356_28780 - host specificity protein, at 6,691,913 to 6,692,803 _28780 AO356_28785: AO356_28785 - decarboxylase, at 6,693,412 to 6,694,806 _28785 Position (kb) 6691 6692 6693Strain fitness (log2 ratio) -1 0 1at 6691.049 kb on + strand, within AO356_28770at 6691.050 kb on - strand, within AO356_28770at 6691.318 kb on - strandat 6691.441 kb on - strandat 6691.458 kb on - strandat 6691.489 kb on + strandat 6691.490 kb on - strandat 6691.490 kb on - strandat 6691.556 kb on - strand, within AO356_28775at 6692.129 kb on - strand, within AO356_28780at 6692.587 kb on - strand, within AO356_28780at 6692.757 kb on + strandat 6692.757 kb on + strandat 6692.852 kb on - strandat 6692.852 kb on - strandat 6692.852 kb on - strandat 6692.852 kb on - strandat 6692.927 kb on - strandat 6692.932 kb on - strandat 6692.932 kb on - strandat 6692.982 kb on - strandat 6693.231 kb on + strandat 6693.250 kb on + strandat 6693.255 kb on - strandat 6693.312 kb on - strandat 6693.411 kb on + strandat 6693.411 kb on + strandat 6693.412 kb on - strandat 6693.532 kb on - strandat 6693.589 kb on - strand, within AO356_28785at 6693.653 kb on - strand, within AO356_28785at 6693.653 kb on - strand, within AO356_28785at 6693.653 kb on - strand, within AO356_28785at 6693.722 kb on + strand, within AO356_28785at 6693.722 kb on + strand, within AO356_28785at 6693.723 kb on - strand, within AO356_28785at 6693.723 kb on - strand, within AO356_28785

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 5 mM
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6,691,049 + AO356_28770 0.85 +0.0
6,691,050 - AO356_28770 0.86 +0.6
6,691,318 - +0.3
6,691,441 - -0.1
6,691,458 - +1.2
6,691,489 + +0.5
6,691,490 - +1.5
6,691,490 - +0.9
6,691,556 - AO356_28775 0.18 +0.6
6,692,129 - AO356_28780 0.24 +0.3
6,692,587 - AO356_28780 0.76 +0.1
6,692,757 + -1.2
6,692,757 + +0.4
6,692,852 - +0.0
6,692,852 - +0.1
6,692,852 - -0.4
6,692,852 - +0.8
6,692,927 - -0.6
6,692,932 - +0.1
6,692,932 - +0.0
6,692,982 - -0.3
6,693,231 + -0.3
6,693,250 + -0.1
6,693,255 - +0.0
6,693,312 - +0.5
6,693,411 + +0.7
6,693,411 + +0.7
6,693,412 - -0.2
6,693,532 - +1.1
6,693,589 - AO356_28785 0.13 +0.3
6,693,653 - AO356_28785 0.17 +0.3
6,693,653 - AO356_28785 0.17 -0.2
6,693,653 - AO356_28785 0.17 +0.4
6,693,722 + AO356_28785 0.22 +1.1
6,693,722 + AO356_28785 0.22 +0.3
6,693,723 - AO356_28785 0.22 -0.0
6,693,723 - AO356_28785 0.22 +0.3

Or see this region's nucleotide sequence