Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_28780
Experiment: syringaldehyde 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | syringaldehyde 5 mM |
---|---|---|---|---|---|
remove | |||||
6,691,049 | + | AO356_28770 | 0.85 | +0.0 | |
6,691,050 | - | AO356_28770 | 0.86 | +0.6 | |
6,691,318 | - | +0.3 | |||
6,691,441 | - | -0.1 | |||
6,691,458 | - | +1.2 | |||
6,691,489 | + | +0.5 | |||
6,691,490 | - | +1.5 | |||
6,691,490 | - | +0.9 | |||
6,691,556 | - | AO356_28775 | 0.18 | +0.6 | |
6,692,129 | - | AO356_28780 | 0.24 | +0.3 | |
6,692,587 | - | AO356_28780 | 0.76 | +0.1 | |
6,692,757 | + | -1.2 | |||
6,692,757 | + | +0.4 | |||
6,692,852 | - | +0.0 | |||
6,692,852 | - | +0.1 | |||
6,692,852 | - | -0.4 | |||
6,692,852 | - | +0.8 | |||
6,692,927 | - | -0.6 | |||
6,692,932 | - | +0.1 | |||
6,692,932 | - | +0.0 | |||
6,692,982 | - | -0.3 | |||
6,693,231 | + | -0.3 | |||
6,693,250 | + | -0.1 | |||
6,693,255 | - | +0.0 | |||
6,693,312 | - | +0.5 | |||
6,693,411 | + | +0.7 | |||
6,693,411 | + | +0.7 | |||
6,693,412 | - | -0.2 | |||
6,693,532 | - | +1.1 | |||
6,693,589 | - | AO356_28785 | 0.13 | +0.3 | |
6,693,653 | - | AO356_28785 | 0.17 | +0.3 | |
6,693,653 | - | AO356_28785 | 0.17 | -0.2 | |
6,693,653 | - | AO356_28785 | 0.17 | +0.4 | |
6,693,722 | + | AO356_28785 | 0.22 | +1.1 | |
6,693,722 | + | AO356_28785 | 0.22 | +0.3 | |
6,693,723 | - | AO356_28785 | 0.22 | -0.0 | |
6,693,723 | - | AO356_28785 | 0.22 | +0.3 |
Or see this region's nucleotide sequence