Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_26340

Experiment: syringaldehyde 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_26335 and AO356_26340 are separated by 300 nucleotidesAO356_26340 and AO356_26345 are separated by 16 nucleotidesAO356_26345 and AO356_26350 are separated by 16 nucleotides AO356_26335: AO356_26335 - dolichyl-phosphate-mannose-protein mannosyltransferase, at 5,964,069 to 5,965,526 _26335 AO356_26340: AO356_26340 - AMP-binding protein, at 5,965,827 to 5,967,491 _26340 AO356_26345: AO356_26345 - 3-hydroxy-2-methylbutyryl-CoA dehydrogenase, at 5,967,508 to 5,968,269 _26345 AO356_26350: AO356_26350 - acetyl-CoA acetyltransferase, at 5,968,286 to 5,969,473 _26350 Position (kb) 5965 5966 5967 5968Strain fitness (log2 ratio) -2 -1 0 1 2at 5964.843 kb on + strand, within AO356_26335at 5964.843 kb on + strand, within AO356_26335at 5964.844 kb on - strand, within AO356_26335at 5964.928 kb on + strand, within AO356_26335at 5964.929 kb on - strand, within AO356_26335at 5964.946 kb on + strand, within AO356_26335at 5964.947 kb on - strand, within AO356_26335at 5964.993 kb on + strand, within AO356_26335at 5964.993 kb on + strand, within AO356_26335at 5964.993 kb on + strand, within AO356_26335at 5964.994 kb on - strand, within AO356_26335at 5965.498 kb on - strandat 5965.524 kb on + strandat 5965.525 kb on - strandat 5965.613 kb on - strandat 5965.690 kb on + strandat 5965.690 kb on + strandat 5965.690 kb on + strandat 5965.690 kb on + strandat 5965.690 kb on + strandat 5965.691 kb on - strandat 5965.691 kb on - strandat 5965.691 kb on - strandat 5965.691 kb on - strandat 5965.691 kb on - strandat 5965.810 kb on - strandat 5965.810 kb on - strandat 5965.837 kb on - strandat 5966.122 kb on + strand, within AO356_26340at 5966.151 kb on + strand, within AO356_26340at 5966.152 kb on - strand, within AO356_26340at 5966.329 kb on - strand, within AO356_26340at 5966.484 kb on + strand, within AO356_26340at 5966.484 kb on + strand, within AO356_26340at 5966.485 kb on - strand, within AO356_26340at 5966.562 kb on + strand, within AO356_26340at 5966.562 kb on + strand, within AO356_26340at 5966.563 kb on - strand, within AO356_26340at 5966.563 kb on - strand, within AO356_26340at 5966.610 kb on + strand, within AO356_26340at 5966.610 kb on + strand, within AO356_26340at 5966.610 kb on + strand, within AO356_26340at 5966.610 kb on + strand, within AO356_26340at 5966.611 kb on - strand, within AO356_26340at 5966.611 kb on - strand, within AO356_26340at 5966.658 kb on + strand, within AO356_26340at 5966.658 kb on + strand, within AO356_26340at 5966.658 kb on + strand, within AO356_26340at 5966.745 kb on - strand, within AO356_26340at 5966.745 kb on - strand, within AO356_26340at 5967.073 kb on - strand, within AO356_26340at 5967.075 kb on + strand, within AO356_26340at 5967.075 kb on + strand, within AO356_26340at 5967.076 kb on - strand, within AO356_26340at 5967.076 kb on - strand, within AO356_26340at 5967.364 kb on - strandat 5967.428 kb on + strandat 5967.807 kb on + strand, within AO356_26345at 5967.807 kb on + strand, within AO356_26345at 5967.808 kb on - strand, within AO356_26345at 5967.808 kb on - strand, within AO356_26345at 5967.858 kb on + strand, within AO356_26345at 5967.936 kb on + strand, within AO356_26345at 5967.936 kb on + strand, within AO356_26345at 5967.937 kb on - strand, within AO356_26345at 5967.937 kb on - strand, within AO356_26345at 5968.197 kb on + strandat 5968.198 kb on - strandat 5968.267 kb on + strandat 5968.267 kb on + strandat 5968.267 kb on + strandat 5968.268 kb on - strandat 5968.271 kb on + strandat 5968.271 kb on + strandat 5968.271 kb on + strandat 5968.271 kb on + strandat 5968.272 kb on - strandat 5968.300 kb on + strandat 5968.301 kb on - strandat 5968.301 kb on - strandat 5968.301 kb on - strandat 5968.301 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 5 mM
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5,964,843 + AO356_26335 0.53 -0.1
5,964,843 + AO356_26335 0.53 +0.2
5,964,844 - AO356_26335 0.53 -0.9
5,964,928 + AO356_26335 0.59 -1.9
5,964,929 - AO356_26335 0.59 +0.6
5,964,946 + AO356_26335 0.60 +1.2
5,964,947 - AO356_26335 0.60 -0.4
5,964,993 + AO356_26335 0.63 +0.9
5,964,993 + AO356_26335 0.63 +0.2
5,964,993 + AO356_26335 0.63 +0.6
5,964,994 - AO356_26335 0.63 -0.1
5,965,498 - +0.5
5,965,524 + +0.8
5,965,525 - -0.4
5,965,613 - +1.2
5,965,690 + -1.1
5,965,690 + +0.1
5,965,690 + +0.7
5,965,690 + +0.4
5,965,690 + +0.5
5,965,691 - +0.1
5,965,691 - +0.5
5,965,691 - +0.5
5,965,691 - -0.2
5,965,691 - +0.8
5,965,810 - -1.2
5,965,810 - +0.4
5,965,837 - -0.1
5,966,122 + AO356_26340 0.18 +0.7
5,966,151 + AO356_26340 0.19 -0.6
5,966,152 - AO356_26340 0.20 -0.1
5,966,329 - AO356_26340 0.30 +0.4
5,966,484 + AO356_26340 0.39 +0.3
5,966,484 + AO356_26340 0.39 -0.8
5,966,485 - AO356_26340 0.40 +0.7
5,966,562 + AO356_26340 0.44 +0.6
5,966,562 + AO356_26340 0.44 +1.6
5,966,563 - AO356_26340 0.44 +0.4
5,966,563 - AO356_26340 0.44 -0.7
5,966,610 + AO356_26340 0.47 -0.3
5,966,610 + AO356_26340 0.47 -0.7
5,966,610 + AO356_26340 0.47 +0.0
5,966,610 + AO356_26340 0.47 -0.5
5,966,611 - AO356_26340 0.47 -1.1
5,966,611 - AO356_26340 0.47 +0.6
5,966,658 + AO356_26340 0.50 -0.7
5,966,658 + AO356_26340 0.50 +0.4
5,966,658 + AO356_26340 0.50 -0.6
5,966,745 - AO356_26340 0.55 +0.4
5,966,745 - AO356_26340 0.55 +0.3
5,967,073 - AO356_26340 0.75 +0.3
5,967,075 + AO356_26340 0.75 -0.2
5,967,075 + AO356_26340 0.75 +1.2
5,967,076 - AO356_26340 0.75 -1.4
5,967,076 - AO356_26340 0.75 -0.4
5,967,364 - +1.6
5,967,428 + +0.4
5,967,807 + AO356_26345 0.39 -1.2
5,967,807 + AO356_26345 0.39 -0.4
5,967,808 - AO356_26345 0.39 -1.2
5,967,808 - AO356_26345 0.39 -0.6
5,967,858 + AO356_26345 0.46 -0.8
5,967,936 + AO356_26345 0.56 -0.0
5,967,936 + AO356_26345 0.56 +0.9
5,967,937 - AO356_26345 0.56 +0.0
5,967,937 - AO356_26345 0.56 -0.6
5,968,197 + -0.2
5,968,198 - +1.8
5,968,267 + +2.2
5,968,267 + +1.2
5,968,267 + -0.6
5,968,268 - +0.0
5,968,271 + -0.6
5,968,271 + -0.9
5,968,271 + -1.6
5,968,271 + +0.0
5,968,272 - -0.1
5,968,300 + +0.4
5,968,301 - +1.2
5,968,301 - +0.4
5,968,301 - +0.5
5,968,301 - +0.4

Or see this region's nucleotide sequence