Experiment: syringaldehyde 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_26320 and AO356_26325 are separated by 27 nucleotides AO356_26325 and AO356_26330 are separated by 1 nucleotides AO356_26330 and AO356_26335 are separated by 67 nucleotides
AO356_26320: AO356_26320 - protein CapI, at 5,961,964 to 5,962,935
_26320
AO356_26325: AO356_26325 - dolichol-phosphate mannosyltransferase, at 5,962,963 to 5,963,706
_26325
AO356_26330: AO356_26330 - Lipid A biosynthesis, N-terminal, at 5,963,708 to 5,964,001
_26330
AO356_26335: AO356_26335 - dolichyl-phosphate-mannose-protein mannosyltransferase, at 5,964,069 to 5,965,526
_26335
Position (kb) 5963
5964
5965 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5962.921 kb on + strand at 5962.978 kb on + strand at 5962.978 kb on + strand at 5962.978 kb on + strand at 5962.979 kb on - strand at 5962.979 kb on - strand at 5962.979 kb on - strand at 5962.979 kb on - strand at 5962.979 kb on - strand at 5962.979 kb on - strand at 5963.200 kb on + strand, within AO356_26325 at 5963.201 kb on - strand, within AO356_26325 at 5963.502 kb on + strand, within AO356_26325 at 5963.502 kb on + strand, within AO356_26325 at 5963.599 kb on + strand, within AO356_26325 at 5963.660 kb on + strand at 5963.661 kb on - strand at 5963.790 kb on - strand, within AO356_26330 at 5963.798 kb on + strand, within AO356_26330 at 5963.870 kb on + strand, within AO356_26330 at 5963.879 kb on + strand, within AO356_26330 at 5963.880 kb on - strand, within AO356_26330 at 5964.193 kb on - strand at 5964.315 kb on + strand, within AO356_26335 at 5964.316 kb on - strand, within AO356_26335 at 5964.384 kb on + strand, within AO356_26335 at 5964.393 kb on + strand, within AO356_26335 at 5964.393 kb on + strand, within AO356_26335 at 5964.393 kb on + strand, within AO356_26335 at 5964.393 kb on + strand, within AO356_26335 at 5964.393 kb on + strand, within AO356_26335 at 5964.394 kb on - strand, within AO356_26335 at 5964.394 kb on - strand, within AO356_26335 at 5964.394 kb on - strand, within AO356_26335 at 5964.456 kb on + strand, within AO356_26335 at 5964.457 kb on - strand, within AO356_26335 at 5964.457 kb on - strand, within AO356_26335 at 5964.501 kb on + strand, within AO356_26335 at 5964.502 kb on - strand, within AO356_26335 at 5964.504 kb on + strand, within AO356_26335 at 5964.505 kb on - strand, within AO356_26335 at 5964.505 kb on - strand, within AO356_26335 at 5964.588 kb on + strand, within AO356_26335 at 5964.816 kb on + strand, within AO356_26335 at 5964.843 kb on + strand, within AO356_26335 at 5964.843 kb on + strand, within AO356_26335 at 5964.844 kb on - strand, within AO356_26335 at 5964.928 kb on + strand, within AO356_26335 at 5964.929 kb on - strand, within AO356_26335 at 5964.946 kb on + strand, within AO356_26335 at 5964.947 kb on - strand, within AO356_26335 at 5964.993 kb on + strand, within AO356_26335 at 5964.993 kb on + strand, within AO356_26335 at 5964.993 kb on + strand, within AO356_26335 at 5964.994 kb on - strand, within AO356_26335
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 5 mM remove 5,962,921 + -0.2 5,962,978 + +0.6 5,962,978 + -0.1 5,962,978 + +0.4 5,962,979 - -0.4 5,962,979 - +0.2 5,962,979 - +0.5 5,962,979 - -0.5 5,962,979 - -0.5 5,962,979 - +0.5 5,963,200 + AO356_26325 0.32 +0.5 5,963,201 - AO356_26325 0.32 +0.2 5,963,502 + AO356_26325 0.72 -0.6 5,963,502 + AO356_26325 0.72 +0.4 5,963,599 + AO356_26325 0.85 +0.1 5,963,660 + -0.1 5,963,661 - +0.9 5,963,790 - AO356_26330 0.28 +2.4 5,963,798 + AO356_26330 0.31 +0.4 5,963,870 + AO356_26330 0.55 +0.7 5,963,879 + AO356_26330 0.58 +0.6 5,963,880 - AO356_26330 0.59 +0.3 5,964,193 - -2.2 5,964,315 + AO356_26335 0.17 -0.1 5,964,316 - AO356_26335 0.17 -0.0 5,964,384 + AO356_26335 0.22 -2.1 5,964,393 + AO356_26335 0.22 +0.7 5,964,393 + AO356_26335 0.22 -0.6 5,964,393 + AO356_26335 0.22 -0.9 5,964,393 + AO356_26335 0.22 -0.3 5,964,393 + AO356_26335 0.22 +0.9 5,964,394 - AO356_26335 0.22 +0.5 5,964,394 - AO356_26335 0.22 -1.1 5,964,394 - AO356_26335 0.22 +0.1 5,964,456 + AO356_26335 0.27 +0.0 5,964,457 - AO356_26335 0.27 -0.2 5,964,457 - AO356_26335 0.27 -0.1 5,964,501 + AO356_26335 0.30 +0.1 5,964,502 - AO356_26335 0.30 -2.5 5,964,504 + AO356_26335 0.30 +0.2 5,964,505 - AO356_26335 0.30 -0.0 5,964,505 - AO356_26335 0.30 -0.1 5,964,588 + AO356_26335 0.36 -1.2 5,964,816 + AO356_26335 0.51 -0.6 5,964,843 + AO356_26335 0.53 -0.1 5,964,843 + AO356_26335 0.53 +0.2 5,964,844 - AO356_26335 0.53 -0.9 5,964,928 + AO356_26335 0.59 -1.9 5,964,929 - AO356_26335 0.59 +0.6 5,964,946 + AO356_26335 0.60 +1.2 5,964,947 - AO356_26335 0.60 -0.4 5,964,993 + AO356_26335 0.63 +0.9 5,964,993 + AO356_26335 0.63 +0.2 5,964,993 + AO356_26335 0.63 +0.6 5,964,994 - AO356_26335 0.63 -0.1
Or see this region's nucleotide sequence