Experiment: syringaldehyde 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_16430 and AO356_16435 are separated by 481 nucleotides AO356_16435 and AO356_16440 are separated by 3 nucleotides AO356_16440 and AO356_16445 are separated by 786 nucleotides
AO356_16430: AO356_16430 - ABC transporter substrate-binding protein, at 3,714,235 to 3,715,248
_16430
AO356_16435: AO356_16435 - hypothetical protein, at 3,715,730 to 3,716,173
_16435
AO356_16440: AO356_16440 - hypothetical protein, at 3,716,177 to 3,716,764
_16440
AO356_16445: AO356_16445 - MFS transporter, at 3,717,551 to 3,718,759
_16445
Position (kb)
3716
3717 Strain fitness (log2 ratio)
-2
-1
0
1 at 3715.270 kb on + strand at 3715.270 kb on + strand at 3715.270 kb on + strand at 3715.271 kb on - strand at 3715.493 kb on + strand at 3715.493 kb on + strand at 3715.493 kb on + strand at 3715.493 kb on + strand at 3715.494 kb on - strand at 3715.494 kb on - strand at 3715.494 kb on - strand at 3715.494 kb on - strand at 3715.494 kb on - strand at 3715.546 kb on + strand at 3715.549 kb on + strand at 3715.549 kb on + strand at 3715.549 kb on + strand at 3715.550 kb on - strand at 3715.550 kb on - strand at 3715.550 kb on - strand at 3715.581 kb on + strand at 3715.582 kb on - strand at 3715.598 kb on + strand at 3715.598 kb on + strand at 3715.599 kb on - strand at 3715.638 kb on - strand at 3715.688 kb on + strand at 3715.688 kb on + strand at 3715.689 kb on - strand at 3715.739 kb on + strand at 3715.740 kb on - strand at 3715.740 kb on - strand at 3715.740 kb on - strand at 3715.740 kb on - strand at 3715.740 kb on - strand at 3715.740 kb on - strand at 3715.740 kb on - strand at 3715.740 kb on - strand at 3715.740 kb on - strand at 3715.740 kb on - strand at 3715.740 kb on - strand at 3715.765 kb on - strand at 3716.007 kb on - strand, within AO356_16435 at 3716.007 kb on - strand, within AO356_16435 at 3716.087 kb on - strand, within AO356_16435 at 3716.125 kb on + strand, within AO356_16435 at 3716.161 kb on + strand at 3716.161 kb on + strand at 3716.162 kb on - strand at 3716.162 kb on - strand at 3716.162 kb on - strand at 3716.162 kb on - strand at 3716.172 kb on - strand at 3716.176 kb on + strand at 3716.176 kb on + strand at 3716.176 kb on + strand at 3716.176 kb on + strand at 3716.176 kb on + strand at 3716.176 kb on + strand at 3716.177 kb on - strand at 3716.177 kb on - strand at 3716.177 kb on - strand at 3716.183 kb on + strand at 3716.183 kb on + strand at 3716.183 kb on + strand at 3716.183 kb on + strand at 3716.183 kb on + strand at 3716.183 kb on + strand at 3716.183 kb on + strand at 3716.184 kb on - strand at 3716.184 kb on - strand at 3716.184 kb on - strand at 3716.184 kb on - strand at 3716.184 kb on - strand at 3716.184 kb on - strand at 3716.184 kb on - strand at 3716.222 kb on + strand at 3716.519 kb on + strand, within AO356_16440 at 3716.519 kb on + strand, within AO356_16440 at 3716.519 kb on + strand, within AO356_16440 at 3716.519 kb on + strand, within AO356_16440 at 3716.520 kb on - strand, within AO356_16440 at 3716.520 kb on - strand, within AO356_16440 at 3716.520 kb on - strand, within AO356_16440 at 3716.520 kb on - strand, within AO356_16440 at 3716.520 kb on - strand, within AO356_16440 at 3716.529 kb on + strand, within AO356_16440 at 3716.530 kb on - strand, within AO356_16440 at 3716.530 kb on - strand, within AO356_16440 at 3716.706 kb on + strand at 3716.706 kb on + strand at 3716.744 kb on + strand at 3716.744 kb on + strand at 3716.745 kb on - strand at 3716.748 kb on + strand at 3716.748 kb on + strand at 3716.748 kb on + strand at 3716.748 kb on + strand at 3716.748 kb on + strand at 3716.748 kb on + strand at 3716.748 kb on + strand at 3716.748 kb on + strand at 3716.748 kb on + strand at 3716.748 kb on + strand at 3716.748 kb on + strand at 3716.749 kb on - strand at 3716.749 kb on - strand at 3716.749 kb on - strand at 3716.749 kb on - strand at 3716.749 kb on - strand at 3716.749 kb on - strand at 3716.749 kb on - strand at 3716.749 kb on - strand at 3716.749 kb on - strand at 3716.749 kb on - strand at 3716.749 kb on - strand at 3716.749 kb on - strand at 3716.749 kb on - strand at 3716.753 kb on + strand at 3716.754 kb on - strand at 3716.754 kb on - strand at 3716.754 kb on - strand at 3716.762 kb on + strand at 3716.763 kb on - strand at 3716.778 kb on + strand at 3716.778 kb on + strand at 3717.202 kb on - strand at 3717.443 kb on - strand at 3717.446 kb on + strand at 3717.446 kb on + strand at 3717.446 kb on + strand at 3717.446 kb on + strand at 3717.446 kb on + strand at 3717.446 kb on + strand at 3717.446 kb on + strand at 3717.446 kb on + strand at 3717.446 kb on + strand at 3717.446 kb on + strand at 3717.446 kb on + strand at 3717.447 kb on - strand at 3717.447 kb on - strand at 3717.447 kb on - strand at 3717.447 kb on - strand at 3717.447 kb on - strand at 3717.447 kb on - strand at 3717.447 kb on - strand at 3717.598 kb on + strand at 3717.598 kb on + strand at 3717.599 kb on - strand at 3717.599 kb on - strand at 3717.599 kb on - strand at 3717.599 kb on - strand at 3717.599 kb on - strand at 3717.610 kb on + strand at 3717.610 kb on + strand at 3717.611 kb on - strand at 3717.617 kb on + strand at 3717.617 kb on + strand at 3717.618 kb on - strand at 3717.748 kb on + strand, within AO356_16445 at 3717.749 kb on - strand, within AO356_16445
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 5 mM remove 3,715,270 + -0.8 3,715,270 + -0.1 3,715,270 + +0.7 3,715,271 - +0.2 3,715,493 + -0.0 3,715,493 + +0.7 3,715,493 + -0.2 3,715,493 + +0.6 3,715,494 - -0.9 3,715,494 - -0.3 3,715,494 - -2.6 3,715,494 - +0.6 3,715,494 - -0.8 3,715,546 + -0.2 3,715,549 + -1.4 3,715,549 + -0.3 3,715,549 + +0.7 3,715,550 - +0.7 3,715,550 - -0.1 3,715,550 - +0.0 3,715,581 + +0.4 3,715,582 - +0.5 3,715,598 + +0.9 3,715,598 + -0.9 3,715,599 - -0.0 3,715,638 - +0.6 3,715,688 + -2.0 3,715,688 + -0.2 3,715,689 - +0.2 3,715,739 + -0.8 3,715,740 - +0.9 3,715,740 - +0.7 3,715,740 - +0.4 3,715,740 - -0.5 3,715,740 - -0.4 3,715,740 - -1.0 3,715,740 - +1.0 3,715,740 - -0.3 3,715,740 - +0.7 3,715,740 - -0.0 3,715,740 - +0.3 3,715,765 - -0.7 3,716,007 - AO356_16435 0.62 +0.3 3,716,007 - AO356_16435 0.62 +0.9 3,716,087 - AO356_16435 0.80 -0.4 3,716,125 + AO356_16435 0.89 -0.0 3,716,161 + -0.5 3,716,161 + -0.2 3,716,162 - -0.0 3,716,162 - -0.4 3,716,162 - +0.1 3,716,162 - -0.2 3,716,172 - +0.7 3,716,176 + -0.6 3,716,176 + +0.6 3,716,176 + +0.0 3,716,176 + +0.7 3,716,176 + -0.8 3,716,176 + +0.0 3,716,177 - -0.3 3,716,177 - -0.2 3,716,177 - +0.5 3,716,183 + -1.1 3,716,183 + +0.7 3,716,183 + +0.4 3,716,183 + +0.4 3,716,183 + +0.8 3,716,183 + +0.2 3,716,183 + +0.1 3,716,184 - +0.2 3,716,184 - +0.0 3,716,184 - +0.6 3,716,184 - -0.3 3,716,184 - +0.8 3,716,184 - -0.9 3,716,184 - +0.4 3,716,222 + -0.4 3,716,519 + AO356_16440 0.58 +1.0 3,716,519 + AO356_16440 0.58 -0.5 3,716,519 + AO356_16440 0.58 -0.1 3,716,519 + AO356_16440 0.58 -0.6 3,716,520 - AO356_16440 0.58 +1.1 3,716,520 - AO356_16440 0.58 +0.3 3,716,520 - AO356_16440 0.58 +1.1 3,716,520 - AO356_16440 0.58 +1.6 3,716,520 - AO356_16440 0.58 +0.2 3,716,529 + AO356_16440 0.60 -0.4 3,716,530 - AO356_16440 0.60 +0.4 3,716,530 - AO356_16440 0.60 +1.1 3,716,706 + +0.8 3,716,706 + -0.7 3,716,744 + -0.7 3,716,744 + +0.2 3,716,745 - +0.1 3,716,748 + -0.4 3,716,748 + +0.5 3,716,748 + -0.8 3,716,748 + +0.7 3,716,748 + +0.3 3,716,748 + +0.1 3,716,748 + -0.0 3,716,748 + +0.9 3,716,748 + +1.1 3,716,748 + -1.2 3,716,748 + +0.5 3,716,749 - +0.3 3,716,749 - +1.6 3,716,749 - +0.5 3,716,749 - +0.5 3,716,749 - -0.1 3,716,749 - -1.2 3,716,749 - +0.7 3,716,749 - +1.1 3,716,749 - -0.9 3,716,749 - +0.1 3,716,749 - +1.1 3,716,749 - -1.5 3,716,749 - +0.4 3,716,753 + -0.3 3,716,754 - +0.4 3,716,754 - +0.8 3,716,754 - -0.5 3,716,762 + +0.0 3,716,763 - +1.3 3,716,778 + +0.7 3,716,778 + +0.8 3,717,202 - +0.7 3,717,443 - -0.7 3,717,446 + -0.1 3,717,446 + -0.2 3,717,446 + +0.7 3,717,446 + -0.7 3,717,446 + +0.3 3,717,446 + +1.2 3,717,446 + +0.8 3,717,446 + +1.7 3,717,446 + -0.4 3,717,446 + +0.2 3,717,446 + +0.2 3,717,447 - -0.3 3,717,447 - +1.0 3,717,447 - +0.7 3,717,447 - -0.6 3,717,447 - +0.1 3,717,447 - +0.1 3,717,447 - +0.1 3,717,598 + +0.1 3,717,598 + -0.1 3,717,599 - +0.6 3,717,599 - +0.3 3,717,599 - -0.0 3,717,599 - +0.7 3,717,599 - +0.5 3,717,610 + +0.6 3,717,610 + -0.1 3,717,611 - -0.1 3,717,617 + -0.8 3,717,617 + +0.2 3,717,618 - -1.0 3,717,748 + AO356_16445 0.16 +0.9 3,717,749 - AO356_16445 0.16 +0.2
Or see this region's nucleotide sequence