Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03280

Experiment: syringaldehyde 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_03275 and AO356_03280 are separated by 233 nucleotidesAO356_03280 and AO356_03285 are separated by 105 nucleotidesAO356_03285 and AO356_03290 are separated by 207 nucleotides AO356_03275: AO356_03275 - acyl-CoA thioesterase, at 726,110 to 726,907 _03275 AO356_03280: AO356_03280 - metal-chelation protein CHAD, at 727,141 to 727,902 _03280 AO356_03285: AO356_03285 - hypothetical protein, at 728,008 to 728,298 _03285 AO356_03290: AO356_03290 - alpha/beta hydrolase, at 728,506 to 729,543 _03290 Position (kb) 727 728Strain fitness (log2 ratio) -2 -1 0 1 2at 726.225 kb on + strand, within AO356_03275at 726.225 kb on + strand, within AO356_03275at 726.225 kb on + strand, within AO356_03275at 726.225 kb on + strand, within AO356_03275at 726.226 kb on - strand, within AO356_03275at 726.226 kb on - strand, within AO356_03275at 726.433 kb on + strand, within AO356_03275at 726.434 kb on - strand, within AO356_03275at 726.513 kb on + strand, within AO356_03275at 726.513 kb on + strand, within AO356_03275at 726.514 kb on - strand, within AO356_03275at 726.736 kb on + strand, within AO356_03275at 726.737 kb on - strand, within AO356_03275at 726.737 kb on - strand, within AO356_03275at 726.784 kb on + strand, within AO356_03275at 726.784 kb on + strand, within AO356_03275at 726.785 kb on - strand, within AO356_03275at 726.785 kb on - strand, within AO356_03275at 726.792 kb on + strand, within AO356_03275at 726.792 kb on + strand, within AO356_03275at 726.792 kb on + strand, within AO356_03275at 726.793 kb on - strand, within AO356_03275at 726.793 kb on - strand, within AO356_03275at 727.064 kb on + strandat 727.064 kb on + strandat 727.064 kb on + strandat 727.064 kb on + strandat 727.065 kb on - strandat 727.065 kb on - strandat 727.079 kb on - strandat 727.079 kb on - strandat 727.079 kb on - strandat 727.131 kb on + strandat 727.131 kb on + strandat 727.131 kb on + strandat 727.131 kb on + strandat 727.131 kb on + strandat 727.132 kb on - strandat 727.365 kb on - strand, within AO356_03280at 727.365 kb on - strand, within AO356_03280at 727.615 kb on + strand, within AO356_03280at 727.615 kb on + strand, within AO356_03280at 727.615 kb on + strand, within AO356_03280at 727.616 kb on - strand, within AO356_03280at 727.616 kb on - strand, within AO356_03280at 727.616 kb on - strand, within AO356_03280at 727.661 kb on + strand, within AO356_03280at 727.661 kb on + strand, within AO356_03280at 727.661 kb on + strand, within AO356_03280at 727.661 kb on + strand, within AO356_03280at 727.662 kb on - strand, within AO356_03280at 727.662 kb on - strand, within AO356_03280at 727.662 kb on - strand, within AO356_03280at 727.908 kb on + strandat 727.908 kb on + strandat 727.908 kb on + strandat 727.908 kb on + strandat 727.908 kb on + strandat 727.908 kb on + strandat 727.909 kb on - strandat 727.909 kb on - strandat 727.909 kb on - strandat 727.909 kb on - strandat 727.909 kb on - strandat 727.909 kb on - strandat 727.915 kb on + strandat 727.916 kb on - strandat 727.944 kb on + strandat 727.945 kb on - strandat 727.945 kb on - strandat 727.978 kb on + strandat 727.978 kb on + strandat 727.978 kb on + strandat 727.979 kb on - strandat 727.979 kb on - strandat 728.036 kb on + strandat 728.036 kb on + strandat 728.036 kb on + strandat 728.132 kb on + strand, within AO356_03285at 728.212 kb on - strand, within AO356_03285at 728.302 kb on + strandat 728.335 kb on + strandat 728.335 kb on + strandat 728.335 kb on + strandat 728.335 kb on + strandat 728.398 kb on + strandat 728.398 kb on + strandat 728.528 kb on + strandat 728.529 kb on - strandat 728.554 kb on + strandat 728.562 kb on + strandat 728.596 kb on + strandat 728.650 kb on + strand, within AO356_03290at 728.651 kb on - strand, within AO356_03290at 728.651 kb on - strand, within AO356_03290at 728.651 kb on - strand, within AO356_03290at 728.701 kb on + strand, within AO356_03290at 728.701 kb on + strand, within AO356_03290at 728.701 kb on + strand, within AO356_03290at 728.701 kb on + strand, within AO356_03290at 728.702 kb on - strand, within AO356_03290at 728.824 kb on + strand, within AO356_03290at 728.824 kb on + strand, within AO356_03290at 728.824 kb on + strand, within AO356_03290

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 5 mM
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726,225 + AO356_03275 0.14 -0.7
726,225 + AO356_03275 0.14 +1.5
726,225 + AO356_03275 0.14 -1.2
726,225 + AO356_03275 0.14 +0.2
726,226 - AO356_03275 0.15 -1.0
726,226 - AO356_03275 0.15 -1.6
726,433 + AO356_03275 0.40 +1.9
726,434 - AO356_03275 0.41 +0.5
726,513 + AO356_03275 0.51 -1.5
726,513 + AO356_03275 0.51 -0.1
726,514 - AO356_03275 0.51 +0.0
726,736 + AO356_03275 0.78 +0.4
726,737 - AO356_03275 0.79 +0.3
726,737 - AO356_03275 0.79 -0.8
726,784 + AO356_03275 0.84 +0.6
726,784 + AO356_03275 0.84 -0.1
726,785 - AO356_03275 0.85 +1.5
726,785 - AO356_03275 0.85 -0.4
726,792 + AO356_03275 0.85 +0.9
726,792 + AO356_03275 0.85 +0.2
726,792 + AO356_03275 0.85 +1.6
726,793 - AO356_03275 0.86 +0.9
726,793 - AO356_03275 0.86 -0.2
727,064 + +0.1
727,064 + -0.2
727,064 + +0.2
727,064 + +0.1
727,065 - -0.3
727,065 - +0.1
727,079 - -1.8
727,079 - +0.3
727,079 - -1.6
727,131 + -0.5
727,131 + -0.0
727,131 + +1.0
727,131 + +0.8
727,131 + +0.8
727,132 - +0.2
727,365 - AO356_03280 0.29 +0.5
727,365 - AO356_03280 0.29 +0.5
727,615 + AO356_03280 0.62 -0.4
727,615 + AO356_03280 0.62 -0.0
727,615 + AO356_03280 0.62 -0.7
727,616 - AO356_03280 0.62 +0.4
727,616 - AO356_03280 0.62 +0.7
727,616 - AO356_03280 0.62 -0.1
727,661 + AO356_03280 0.68 -0.7
727,661 + AO356_03280 0.68 +0.6
727,661 + AO356_03280 0.68 +0.5
727,661 + AO356_03280 0.68 +1.0
727,662 - AO356_03280 0.68 -0.1
727,662 - AO356_03280 0.68 +0.2
727,662 - AO356_03280 0.68 +0.4
727,908 + +0.3
727,908 + +0.4
727,908 + -0.0
727,908 + +0.8
727,908 + -0.3
727,908 + +0.5
727,909 - +0.3
727,909 - -0.1
727,909 - +1.1
727,909 - -0.0
727,909 - +0.2
727,909 - -0.5
727,915 + +1.9
727,916 - +0.5
727,944 + -0.3
727,945 - +0.2
727,945 - -1.7
727,978 + -0.5
727,978 + +0.6
727,978 + -0.4
727,979 - +0.9
727,979 - +0.6
728,036 + +0.1
728,036 + +0.4
728,036 + +0.3
728,132 + AO356_03285 0.43 +1.1
728,212 - AO356_03285 0.70 +0.6
728,302 + -0.1
728,335 + +0.4
728,335 + -0.2
728,335 + +0.2
728,335 + -0.0
728,398 + +1.0
728,398 + +0.3
728,528 + -1.4
728,529 - +0.1
728,554 + +0.5
728,562 + +0.3
728,596 + +0.1
728,650 + AO356_03290 0.14 -0.5
728,651 - AO356_03290 0.14 -0.8
728,651 - AO356_03290 0.14 -0.3
728,651 - AO356_03290 0.14 -0.8
728,701 + AO356_03290 0.19 +0.6
728,701 + AO356_03290 0.19 -0.9
728,701 + AO356_03290 0.19 +0.5
728,701 + AO356_03290 0.19 -0.3
728,702 - AO356_03290 0.19 +0.4
728,824 + AO356_03290 0.31 +0.4
728,824 + AO356_03290 0.31 -1.3
728,824 + AO356_03290 0.31 -0.1

Or see this region's nucleotide sequence