Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3394 and Shew_3395 are separated by 42 nucleotides Shew_3395 and Shew_3396 are separated by 169 nucleotides Shew_3396 and Shew_3397 are separated by 155 nucleotides
Shew_3394: Shew_3394 - MscS mechanosensitive ion channel (RefSeq), at 4,042,979 to 4,043,812
_3394
Shew_3395: Shew_3395 - radical SAM domain-containing protein (RefSeq), at 4,043,855 to 4,044,733
_3395
Shew_3396: Shew_3396 - hypothetical protein (RefSeq), at 4,044,903 to 4,045,205
_3396
Shew_3397: Shew_3397 - GCN5-related N-acetyltransferase (RefSeq), at 4,045,361 to 4,045,831
_3397
Position (kb) 4043
4044
4045 Strain fitness (log2 ratio) -1
0
1
2
3 at 4043.171 kb on - strand, within Shew_3394 at 4043.418 kb on - strand, within Shew_3394 at 4043.779 kb on - strand at 4044.196 kb on + strand, within Shew_3395 at 4044.350 kb on - strand, within Shew_3395 at 4044.415 kb on + strand, within Shew_3395 at 4044.424 kb on + strand, within Shew_3395 at 4045.269 kb on + strand at 4045.713 kb on + strand, within Shew_3397 at 4045.721 kb on - strand, within Shew_3397
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,043,171 - Shew_3394 0.23 +0.4 4,043,418 - Shew_3394 0.53 -0.8 4,043,779 - -0.4 4,044,196 + Shew_3395 0.39 +0.0 4,044,350 - Shew_3395 0.56 -0.4 4,044,415 + Shew_3395 0.64 -0.1 4,044,424 + Shew_3395 0.65 +3.3 4,045,269 + -0.2 4,045,713 + Shew_3397 0.75 +0.1 4,045,721 - Shew_3397 0.76 +0.1
Or see this region's nucleotide sequence