Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2725 and Shew_2726 are separated by 330 nucleotides Shew_2726 and Shew_2727 are separated by 167 nucleotides Shew_2727 and Shew_2728 are separated by 12 nucleotides
Shew_2725: Shew_2725 - ribokinase-like domain-containing protein (RefSeq), at 3,224,529 to 3,225,620
_2725
Shew_2726: Shew_2726 - hypothetical protein (RefSeq), at 3,225,951 to 3,226,403
_2726
Shew_2727: Shew_2727 - hypothetical protein (RefSeq), at 3,226,571 to 3,227,269
_2727
Shew_2728: Shew_2728 - hypothetical protein (RefSeq), at 3,227,282 to 3,228,163
_2728
Position (kb)
3225
3226
3227 Strain fitness (log2 ratio)
-1
0
1
2 at 3225.205 kb on - strand, within Shew_2725 at 3225.347 kb on + strand, within Shew_2725 at 3225.469 kb on - strand, within Shew_2725 at 3225.646 kb on - strand at 3225.910 kb on + strand at 3226.131 kb on - strand, within Shew_2726 at 3226.168 kb on - strand, within Shew_2726 at 3226.168 kb on - strand, within Shew_2726 at 3226.168 kb on - strand, within Shew_2726 at 3226.168 kb on - strand, within Shew_2726 at 3226.767 kb on - strand, within Shew_2727 at 3227.013 kb on - strand, within Shew_2727 at 3227.043 kb on - strand, within Shew_2727 at 3227.168 kb on - strand, within Shew_2727
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,225,205 - Shew_2725 0.62 -0.3 3,225,347 + Shew_2725 0.75 +1.3 3,225,469 - Shew_2725 0.86 +0.2 3,225,646 - -0.1 3,225,910 + +1.9 3,226,131 - Shew_2726 0.40 -0.1 3,226,168 - Shew_2726 0.48 -0.4 3,226,168 - Shew_2726 0.48 -0.2 3,226,168 - Shew_2726 0.48 -0.5 3,226,168 - Shew_2726 0.48 -0.5 3,226,767 - Shew_2727 0.28 +0.8 3,227,013 - Shew_2727 0.63 +0.1 3,227,043 - Shew_2727 0.68 -0.0 3,227,168 - Shew_2727 0.85 -0.0
Or see this region's nucleotide sequence