Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2032 and Shew_2033 are separated by 315 nucleotides Shew_2033 and Shew_2034 are separated by 150 nucleotides Shew_2034 and Shew_2035 overlap by 4 nucleotides
Shew_2032: Shew_2032 - threonyl-tRNA synthetase (RefSeq), at 2,344,517 to 2,346,445
_2032
Shew_2033: Shew_2033 - hypothetical protein (RefSeq), at 2,346,761 to 2,347,036
_2033
Shew_2034: Shew_2034 - short-chain dehydrogenase/reductase SDR (RefSeq), at 2,347,187 to 2,347,933
_2034
Shew_2035: Shew_2035 - hypothetical protein (RefSeq), at 2,347,930 to 2,348,130
_2035
Position (kb) 2346
2347
2348 Strain fitness (log2 ratio) -1
0
1 at 2346.595 kb on + strand at 2346.604 kb on - strand at 2346.967 kb on + strand, within Shew_2033 at 2346.967 kb on + strand, within Shew_2033 at 2347.093 kb on + strand at 2347.208 kb on - strand at 2347.409 kb on - strand, within Shew_2034 at 2347.708 kb on + strand, within Shew_2034 at 2347.796 kb on + strand, within Shew_2034 at 2347.815 kb on + strand, within Shew_2034 at 2348.021 kb on - strand, within Shew_2035
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,346,595 + -0.0 2,346,604 - +0.4 2,346,967 + Shew_2033 0.75 +0.1 2,346,967 + Shew_2033 0.75 +1.5 2,347,093 + +0.8 2,347,208 - +0.4 2,347,409 - Shew_2034 0.30 +1.0 2,347,708 + Shew_2034 0.70 +0.3 2,347,796 + Shew_2034 0.82 +0.0 2,347,815 + Shew_2034 0.84 -0.0 2,348,021 - Shew_2035 0.45 +0.2
Or see this region's nucleotide sequence