Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1314 and Shew_1315 are separated by 139 nucleotides Shew_1315 and Shew_1316 are separated by 32 nucleotides Shew_1316 and Shew_1317 are separated by 108 nucleotides
Shew_1314: Shew_1314 - hypothetical protein (RefSeq), at 1,525,895 to 1,526,809
_1314
Shew_1315: Shew_1315 - hypothetical protein (RefSeq), at 1,526,949 to 1,527,521
_1315
Shew_1316: Shew_1316 - hypothetical protein (RefSeq), at 1,527,554 to 1,528,033
_1316
Shew_1317: Shew_1317 - TPR repeat-containing protein (RefSeq), at 1,528,142 to 1,530,622
_1317
Position (kb) 1526
1527
1528 Strain fitness (log2 ratio) -1
0
1 at 1525.979 kb on + strand at 1526.014 kb on - strand, within Shew_1314 at 1526.015 kb on - strand, within Shew_1314 at 1526.053 kb on + strand, within Shew_1314 at 1526.492 kb on - strand, within Shew_1314 at 1526.492 kb on - strand, within Shew_1314 at 1526.566 kb on + strand, within Shew_1314 at 1527.043 kb on + strand, within Shew_1315 at 1527.379 kb on + strand, within Shew_1315 at 1528.225 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,525,979 + -0.1 1,526,014 - Shew_1314 0.13 +0.1 1,526,015 - Shew_1314 0.13 -0.0 1,526,053 + Shew_1314 0.17 +0.1 1,526,492 - Shew_1314 0.65 +0.1 1,526,492 - Shew_1314 0.65 +0.0 1,526,566 + Shew_1314 0.73 -0.1 1,527,043 + Shew_1315 0.16 -0.6 1,527,379 + Shew_1315 0.75 -0.1 1,528,225 - -0.2
Or see this region's nucleotide sequence