Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0684 and Shew_0685 are separated by 66 nucleotides Shew_0685 and Shew_0686 are separated by 88 nucleotides Shew_0686 and Shew_0687 are separated by 184 nucleotides
Shew_0684: Shew_0684 - hypothetical protein (RefSeq), at 778,885 to 779,292
_0684
Shew_0685: Shew_0685 - hypothetical protein (RefSeq), at 779,359 to 780,066
_0685
Shew_0686: Shew_0686 - DSBA oxidoreductase (RefSeq), at 780,155 to 780,817
_0686
Shew_0687: Shew_0687 - heat shock protein DnaJ domain-containing protein (RefSeq), at 781,002 to 781,661
_0687
Position (kb) 780
781 Strain fitness (log2 ratio) -1
0
1 at 779.238 kb on + strand, within Shew_0684 at 779.286 kb on + strand at 779.286 kb on + strand at 779.286 kb on + strand at 779.294 kb on - strand at 779.404 kb on + strand at 779.414 kb on + strand at 779.507 kb on - strand, within Shew_0685 at 779.521 kb on - strand, within Shew_0685 at 779.647 kb on - strand, within Shew_0685 at 779.885 kb on - strand, within Shew_0685 at 780.547 kb on + strand, within Shew_0686 at 780.683 kb on - strand, within Shew_0686 at 780.691 kb on + strand, within Shew_0686 at 780.864 kb on - strand at 781.023 kb on + strand at 781.031 kb on - strand at 781.154 kb on + strand, within Shew_0687 at 781.258 kb on + strand, within Shew_0687 at 781.358 kb on + strand, within Shew_0687 at 781.492 kb on - strand, within Shew_0687 at 781.742 kb on - strand at 781.777 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 779,238 + Shew_0684 0.87 +0.6 779,286 + +0.2 779,286 + -0.1 779,286 + +0.7 779,294 - +0.1 779,404 + -0.0 779,414 + -0.1 779,507 - Shew_0685 0.21 -0.0 779,521 - Shew_0685 0.23 -0.7 779,647 - Shew_0685 0.41 -0.1 779,885 - Shew_0685 0.74 +0.0 780,547 + Shew_0686 0.59 -0.5 780,683 - Shew_0686 0.80 -0.5 780,691 + Shew_0686 0.81 -0.2 780,864 - +0.1 781,023 + +0.7 781,031 - -0.5 781,154 + Shew_0687 0.23 +0.6 781,258 + Shew_0687 0.39 +0.1 781,358 + Shew_0687 0.54 +0.1 781,492 - Shew_0687 0.74 -0.9 781,742 - -0.2 781,777 + -0.0
Or see this region's nucleotide sequence