Strain Fitness in Shewanella loihica PV-4 around Shew_0634

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0633 and Shew_0634 are separated by 97 nucleotidesShew_0634 and Shew_0635 are separated by 233 nucleotides Shew_0633: Shew_0633 - hypothetical protein (RefSeq), at 720,299 to 721,741 _0633 Shew_0634: Shew_0634 - hypothetical protein (RefSeq), at 721,839 to 722,240 _0634 Shew_0635: Shew_0635 - hypothetical protein (RefSeq), at 722,474 to 723,169 _0635 Position (kb) 721 722 723Strain fitness (log2 ratio) -1 0 1at 720.999 kb on - strand, within Shew_0633at 721.000 kb on + strand, within Shew_0633at 721.379 kb on + strand, within Shew_0633at 721.462 kb on + strand, within Shew_0633at 721.812 kb on - strandat 721.817 kb on + strandat 721.964 kb on - strand, within Shew_0634at 721.969 kb on - strand, within Shew_0634at 722.219 kb on - strandat 722.473 kb on + strandat 722.546 kb on - strand, within Shew_0635at 722.627 kb on + strand, within Shew_0635at 722.655 kb on - strand, within Shew_0635at 722.655 kb on - strand, within Shew_0635at 722.920 kb on + strand, within Shew_0635

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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720,999 - Shew_0633 0.49 +0.1
721,000 + Shew_0633 0.49 +0.3
721,379 + Shew_0633 0.75 +0.1
721,462 + Shew_0633 0.81 +0.1
721,812 - +0.1
721,817 + +0.1
721,964 - Shew_0634 0.31 -0.4
721,969 - Shew_0634 0.32 -0.6
722,219 - -0.3
722,473 + +0.2
722,546 - Shew_0635 0.10 +0.3
722,627 + Shew_0635 0.22 -0.6
722,655 - Shew_0635 0.26 +0.2
722,655 - Shew_0635 0.26 +0.9
722,920 + Shew_0635 0.64 +0.1

Or see this region's nucleotide sequence