Strain Fitness in Shewanella loihica PV-4 around Shew_0366

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0365 and Shew_0366 are separated by 140 nucleotidesShew_0366 and Shew_0367 overlap by 1 nucleotides Shew_0365: Shew_0365 - hypothetical protein (RefSeq), at 413,659 to 414,147 _0365 Shew_0366: Shew_0366 - ubiquinol oxidase, subunit II (RefSeq), at 414,288 to 415,238 _0366 Shew_0367: Shew_0367 - cytochrome-c oxidase (RefSeq), at 415,238 to 417,226 _0367 Position (kb) 414 415 416Strain fitness (log2 ratio) -1 0 1at 413.464 kb on - strandat 413.897 kb on + strand, within Shew_0365at 413.905 kb on - strand, within Shew_0365at 414.338 kb on - strandat 414.347 kb on + strandat 414.452 kb on + strand, within Shew_0366at 414.783 kb on + strand, within Shew_0366at 414.783 kb on + strand, within Shew_0366at 414.829 kb on - strand, within Shew_0366at 415.257 kb on + strandat 415.636 kb on - strand, within Shew_0367at 415.663 kb on - strand, within Shew_0367at 416.096 kb on + strand, within Shew_0367at 416.106 kb on - strand, within Shew_0367at 416.208 kb on - strand, within Shew_0367

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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413,464 - +0.3
413,897 + Shew_0365 0.49 +0.0
413,905 - Shew_0365 0.50 +0.3
414,338 - +0.7
414,347 + +0.2
414,452 + Shew_0366 0.17 -0.8
414,783 + Shew_0366 0.52 -0.4
414,783 + Shew_0366 0.52 -0.3
414,829 - Shew_0366 0.57 +0.0
415,257 + +0.3
415,636 - Shew_0367 0.20 -0.5
415,663 - Shew_0367 0.21 +0.2
416,096 + Shew_0367 0.43 -0.0
416,106 - Shew_0367 0.44 +0.1
416,208 - Shew_0367 0.49 +0.3

Or see this region's nucleotide sequence