Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_4195 and Dshi_4196 are separated by 3 nucleotides Dshi_4196 and Dshi_4197 overlap by 1 nucleotides Dshi_4197 and Dshi_4198 are separated by 130 nucleotides
Dshi_4195: Dshi_4195 - protein of unknown function DUF112 transmembrane (RefSeq), at 41,874 to 43,385
_4195
Dshi_4196: Dshi_4196 - hypothetical protein (RefSeq), at 43,389 to 43,895
_4196
Dshi_4197: Dshi_4197 - hypothetical protein (RefSeq), at 43,895 to 44,845
_4197
Dshi_4198: Dshi_4198 - transcriptional regulator, LysR family (RefSeq), at 44,976 to 45,887
_4198
Position (kb) 43
44
45 Strain fitness (log2 ratio) -2
-1
0
1
2 at 42.927 kb on + strand, within Dshi_4195 at 42.930 kb on - strand, within Dshi_4195 at 42.940 kb on - strand, within Dshi_4195 at 43.065 kb on - strand, within Dshi_4195 at 43.067 kb on - strand, within Dshi_4195 at 43.082 kb on - strand, within Dshi_4195 at 43.188 kb on + strand, within Dshi_4195 at 43.259 kb on - strand at 43.289 kb on - strand at 43.562 kb on - strand, within Dshi_4196 at 43.723 kb on - strand, within Dshi_4196 at 43.809 kb on + strand, within Dshi_4196 at 43.964 kb on - strand at 44.285 kb on - strand, within Dshi_4197 at 44.411 kb on - strand, within Dshi_4197 at 44.494 kb on + strand, within Dshi_4197 at 44.607 kb on + strand, within Dshi_4197 at 44.701 kb on + strand, within Dshi_4197 at 44.719 kb on - strand, within Dshi_4197 at 44.768 kb on + strand at 44.776 kb on - strand at 44.788 kb on + strand at 44.878 kb on + strand at 45.146 kb on - strand, within Dshi_4198 at 45.189 kb on + strand, within Dshi_4198 at 45.225 kb on + strand, within Dshi_4198 at 45.278 kb on - strand, within Dshi_4198 at 45.470 kb on - strand, within Dshi_4198 at 45.820 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 42,927 + Dshi_4195 0.70 -1.9 42,930 - Dshi_4195 0.70 -0.7 42,940 - Dshi_4195 0.71 -0.3 43,065 - Dshi_4195 0.79 -0.3 43,067 - Dshi_4195 0.79 -1.0 43,082 - Dshi_4195 0.80 +0.7 43,188 + Dshi_4195 0.87 -0.4 43,259 - -1.1 43,289 - -0.3 43,562 - Dshi_4196 0.34 +0.7 43,723 - Dshi_4196 0.66 -0.4 43,809 + Dshi_4196 0.83 -2.1 43,964 - +0.4 44,285 - Dshi_4197 0.41 -1.2 44,411 - Dshi_4197 0.54 -0.1 44,494 + Dshi_4197 0.63 +0.6 44,607 + Dshi_4197 0.75 -0.3 44,701 + Dshi_4197 0.85 -1.6 44,719 - Dshi_4197 0.87 -1.7 44,768 + -0.8 44,776 - +0.2 44,788 + +0.0 44,878 + -0.5 45,146 - Dshi_4198 0.19 +2.1 45,189 + Dshi_4198 0.23 -0.4 45,225 + Dshi_4198 0.27 -0.4 45,278 - Dshi_4198 0.33 -0.8 45,470 - Dshi_4198 0.54 -1.3 45,820 + -0.9
Or see this region's nucleotide sequence