Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_4167

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_4166 and Dshi_4167 overlap by 4 nucleotidesDshi_4167 and Dshi_4168 overlap by 4 nucleotidesDshi_4168 and Dshi_4169 are separated by 100 nucleotides Dshi_4166: Dshi_4166 - hypothetical protein (RefSeq), at 14,227 to 15,177 _4166 Dshi_4167: Dshi_4167 - sulfatase (RefSeq), at 15,174 to 16,799 _4167 Dshi_4168: Dshi_4168 - CDP-alcohol phosphatidyltransferase (RefSeq), at 16,796 to 17,545 _4168 Dshi_4169: Dshi_4169 - cytochrome B561 (RefSeq), at 17,646 to 18,203 _4169 Position (kb) 15 16 17Strain fitness (log2 ratio) -2 -1 0 1at 14.188 kb on - strandat 14.316 kb on - strandat 14.524 kb on + strand, within Dshi_4166at 14.744 kb on + strand, within Dshi_4166at 14.907 kb on - strand, within Dshi_4166at 15.615 kb on + strand, within Dshi_4167at 15.863 kb on - strand, within Dshi_4167at 16.234 kb on - strand, within Dshi_4167at 16.296 kb on - strand, within Dshi_4167at 16.713 kb on + strandat 16.789 kb on + strandat 16.849 kb on - strandat 16.891 kb on - strand, within Dshi_4168at 17.553 kb on + strandat 17.581 kb on - strandat 17.777 kb on - strand, within Dshi_4169

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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14,188 - -0.5
14,316 - -0.7
14,524 + Dshi_4166 0.31 +0.7
14,744 + Dshi_4166 0.54 +0.3
14,907 - Dshi_4166 0.72 +0.2
15,615 + Dshi_4167 0.27 +0.1
15,863 - Dshi_4167 0.42 -1.0
16,234 - Dshi_4167 0.65 -2.0
16,296 - Dshi_4167 0.69 -0.7
16,713 + -0.8
16,789 + +0.6
16,849 - +1.2
16,891 - Dshi_4168 0.13 -0.8
17,553 + -0.8
17,581 - +0.7
17,777 - Dshi_4169 0.23 +0.2

Or see this region's nucleotide sequence