Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_4094 and Dshi_4095 are separated by 643 nucleotides
Dshi_4094: Dshi_4094 - transposase orfA IS5 family element (RefSeq), at 25,737 to 26,090
_4094
Dshi_4095: Dshi_4095 - putative insertion element (IS) transposase (RefSeq), at 26,734 to 27,168
_4095
Position (kb) 26
27
28 Strain fitness (log2 ratio) -2
-1
0
1
2 at 25.767 kb on + strand at 25.771 kb on - strand at 25.879 kb on - strand, within Dshi_4094 at 25.907 kb on - strand, within Dshi_4094 at 25.907 kb on - strand, within Dshi_4094 at 25.934 kb on - strand, within Dshi_4094 at 25.937 kb on + strand, within Dshi_4094 at 25.942 kb on + strand, within Dshi_4094 at 25.954 kb on - strand, within Dshi_4094 at 25.955 kb on - strand, within Dshi_4094 at 26.088 kb on - strand at 26.114 kb on - strand at 26.115 kb on + strand at 26.139 kb on + strand at 26.146 kb on + strand at 26.146 kb on + strand at 26.146 kb on - strand at 26.158 kb on + strand at 26.158 kb on + strand at 26.159 kb on + strand at 26.159 kb on + strand at 26.166 kb on - strand at 26.166 kb on - strand at 26.166 kb on - strand at 26.167 kb on - strand at 26.191 kb on - strand at 26.235 kb on - strand at 26.235 kb on - strand at 26.245 kb on - strand at 26.247 kb on - strand at 26.280 kb on + strand at 26.295 kb on - strand at 26.296 kb on + strand at 26.304 kb on - strand at 26.306 kb on + strand at 26.306 kb on + strand at 26.309 kb on - strand at 26.352 kb on + strand at 26.352 kb on + strand at 26.360 kb on - strand at 26.362 kb on + strand at 26.370 kb on - strand at 26.372 kb on + strand at 26.373 kb on + strand at 26.373 kb on + strand at 26.373 kb on + strand at 26.385 kb on + strand at 26.392 kb on + strand at 26.392 kb on + strand at 26.392 kb on + strand at 26.392 kb on + strand at 26.394 kb on + strand at 26.400 kb on - strand at 26.400 kb on - strand at 26.404 kb on + strand at 26.412 kb on - strand at 26.463 kb on + strand at 26.472 kb on + strand at 26.472 kb on + strand at 26.480 kb on - strand at 26.574 kb on + strand at 26.574 kb on + strand at 26.617 kb on - strand at 26.652 kb on - strand at 26.672 kb on - strand at 26.688 kb on + strand at 26.694 kb on + strand at 26.701 kb on - strand at 26.701 kb on - strand at 26.745 kb on - strand at 26.771 kb on - strand at 26.832 kb on + strand, within Dshi_4095 at 26.832 kb on + strand, within Dshi_4095 at 26.840 kb on - strand, within Dshi_4095 at 26.840 kb on - strand, within Dshi_4095 at 26.840 kb on - strand, within Dshi_4095 at 27.037 kb on - strand, within Dshi_4095 at 27.143 kb on + strand at 27.225 kb on - strand at 27.262 kb on - strand at 27.287 kb on + strand at 27.289 kb on + strand at 27.329 kb on - strand at 27.391 kb on - strand at 27.403 kb on + strand at 27.418 kb on - strand at 27.535 kb on - strand at 27.537 kb on + strand at 27.546 kb on + strand at 27.605 kb on + strand at 27.624 kb on - strand at 27.651 kb on + strand at 27.656 kb on + strand at 27.750 kb on - strand at 27.750 kb on - strand at 27.750 kb on - strand at 27.852 kb on + strand at 27.979 kb on - strand at 28.000 kb on + strand at 28.002 kb on + strand at 28.002 kb on + strand at 28.002 kb on - strand at 28.010 kb on - strand at 28.150 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 25,767 + +0.4 25,771 - -0.5 25,879 - Dshi_4094 0.40 +0.3 25,907 - Dshi_4094 0.48 -0.1 25,907 - Dshi_4094 0.48 -0.9 25,934 - Dshi_4094 0.56 -0.1 25,937 + Dshi_4094 0.56 -0.4 25,942 + Dshi_4094 0.58 -0.9 25,954 - Dshi_4094 0.61 -0.5 25,955 - Dshi_4094 0.62 -0.5 26,088 - -0.3 26,114 - -0.5 26,115 + -1.0 26,139 + +0.4 26,146 + -0.8 26,146 + -0.9 26,146 - -0.0 26,158 + -1.3 26,158 + -0.7 26,159 + -1.4 26,159 + -0.9 26,166 - +1.1 26,166 - +0.2 26,166 - +0.1 26,167 - -0.0 26,191 - -0.3 26,235 - +0.5 26,235 - -0.4 26,245 - -1.3 26,247 - -0.6 26,280 + -0.9 26,295 - -0.0 26,296 + -0.3 26,304 - -0.9 26,306 + -0.5 26,306 + +0.1 26,309 - +0.3 26,352 + -0.9 26,352 + -0.4 26,360 - +0.1 26,362 + -0.9 26,370 - -0.8 26,372 + -0.9 26,373 + -0.8 26,373 + -0.5 26,373 + -0.9 26,385 + -0.1 26,392 + +0.3 26,392 + -0.7 26,392 + -1.2 26,392 + +0.4 26,394 + -0.1 26,400 - -0.1 26,400 - -0.6 26,404 + -0.2 26,412 - -0.4 26,463 + -0.7 26,472 + -0.6 26,472 + +0.1 26,480 - -2.3 26,574 + -0.4 26,574 + +0.1 26,617 - -0.6 26,652 - -0.3 26,672 - -0.1 26,688 + -0.3 26,694 + -0.5 26,701 - -0.6 26,701 - -1.1 26,745 - -0.5 26,771 - -0.0 26,832 + Dshi_4095 0.23 -0.7 26,832 + Dshi_4095 0.23 -0.9 26,840 - Dshi_4095 0.24 -0.4 26,840 - Dshi_4095 0.24 -1.1 26,840 - Dshi_4095 0.24 -0.7 27,037 - Dshi_4095 0.70 -0.4 27,143 + -0.2 27,225 - +0.4 27,262 - +0.7 27,287 + -0.7 27,289 + -0.3 27,329 - -0.1 27,391 - -0.4 27,403 + -0.7 27,418 - +0.6 27,535 - -0.5 27,537 + -0.5 27,546 + -0.9 27,605 + -0.0 27,624 - -0.5 27,651 + -1.3 27,656 + +0.1 27,750 - +1.0 27,750 - -0.5 27,750 - -2.3 27,852 + +0.1 27,979 - -0.2 28,000 + +1.3 28,002 + -0.5 28,002 + +0.2 28,002 - +1.8 28,010 - -1.4 28,150 + -0.0
Or see this region's nucleotide sequence