Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3094

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3091 and Dshi_3092 overlap by 4 nucleotidesDshi_3092 and Dshi_3093 overlap by 4 nucleotidesDshi_3093 and Dshi_3094 overlap by 1 nucleotidesDshi_3094 and Dshi_3095 overlap by 1 nucleotidesDshi_3095 and Dshi_3096 are separated by 2 nucleotides Dshi_3091: Dshi_3091 - aspartate carbamoyltransferase (RefSeq), at 3,260,134 to 3,261,084 _3091 Dshi_3092: Dshi_3092 - hypothetical protein (RefSeq), at 3,261,081 to 3,261,506 _3092 Dshi_3093: Dshi_3093 - hypothetical protein (RefSeq), at 3,261,503 to 3,262,081 _3093 Dshi_3094: Dshi_3094 - dihydroorotase, multifunctional complex type (RefSeq), at 3,262,081 to 3,263,379 _3094 Dshi_3095: Dshi_3095 - protein of unknown function DUF205 (RefSeq), at 3,263,379 to 3,263,990 _3095 Dshi_3096: Dshi_3096 - protein of unknown function DUF805 (RefSeq), at 3,263,993 to 3,264,499 _3096 Position (kb) 3262 3263 3264Strain fitness (log2 ratio) -2 -1 0 1at 3261.093 kb on - strandat 3261.237 kb on - strand, within Dshi_3092at 3261.285 kb on - strand, within Dshi_3092at 3261.359 kb on + strand, within Dshi_3092at 3261.422 kb on + strand, within Dshi_3092at 3261.589 kb on - strand, within Dshi_3093at 3262.039 kb on - strandat 3262.209 kb on + strandat 3262.440 kb on + strand, within Dshi_3094at 3262.527 kb on + strand, within Dshi_3094at 3263.344 kb on - strandat 3263.998 kb on - strandat 3264.004 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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3,261,093 - -0.8
3,261,237 - Dshi_3092 0.37 +0.6
3,261,285 - Dshi_3092 0.48 -0.3
3,261,359 + Dshi_3092 0.65 -0.5
3,261,422 + Dshi_3092 0.80 -1.1
3,261,589 - Dshi_3093 0.15 -0.3
3,262,039 - +0.4
3,262,209 + -2.1
3,262,440 + Dshi_3094 0.28 -2.5
3,262,527 + Dshi_3094 0.34 -1.0
3,263,344 - -1.8
3,263,998 - +0.3
3,264,004 - +1.0

Or see this region's nucleotide sequence