Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0890 and Dshi_0891 are separated by 93 nucleotides Dshi_0891 and Dshi_0892 are separated by 334 nucleotides
Dshi_0890: Dshi_0890 - Ornithine cyclodeaminase (RefSeq), at 905,581 to 906,573
_0890
Dshi_0891: Dshi_0891 - cysteine synthase A (RefSeq), at 906,667 to 907,749
_0891
Dshi_0892: Dshi_0892 - transposase IS4 family protein (RefSeq), at 908,084 to 909,016
_0892
Position (kb) 906
907
908 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 905.708 kb on - strand, within Dshi_0890 at 905.715 kb on - strand, within Dshi_0890 at 905.802 kb on - strand, within Dshi_0890 at 905.808 kb on + strand, within Dshi_0890 at 905.859 kb on + strand, within Dshi_0890 at 905.867 kb on - strand, within Dshi_0890 at 905.948 kb on + strand, within Dshi_0890 at 905.954 kb on - strand, within Dshi_0890 at 905.956 kb on - strand, within Dshi_0890 at 905.968 kb on - strand, within Dshi_0890 at 906.003 kb on + strand, within Dshi_0890 at 906.013 kb on + strand, within Dshi_0890 at 906.026 kb on + strand, within Dshi_0890 at 906.026 kb on - strand, within Dshi_0890 at 906.245 kb on + strand, within Dshi_0890 at 906.258 kb on - strand, within Dshi_0890 at 906.258 kb on - strand, within Dshi_0890 at 906.258 kb on - strand, within Dshi_0890 at 906.281 kb on - strand, within Dshi_0890 at 906.324 kb on - strand, within Dshi_0890 at 906.468 kb on - strand, within Dshi_0890 at 906.501 kb on - strand at 906.512 kb on - strand at 906.747 kb on - strand at 906.755 kb on + strand at 906.776 kb on - strand, within Dshi_0891 at 907.089 kb on + strand, within Dshi_0891 at 907.097 kb on - strand, within Dshi_0891 at 907.187 kb on - strand, within Dshi_0891 at 907.189 kb on + strand, within Dshi_0891 at 907.194 kb on + strand, within Dshi_0891 at 907.244 kb on + strand, within Dshi_0891 at 907.310 kb on + strand, within Dshi_0891 at 907.323 kb on - strand, within Dshi_0891 at 907.400 kb on + strand, within Dshi_0891 at 907.448 kb on + strand, within Dshi_0891 at 907.455 kb on - strand, within Dshi_0891 at 907.468 kb on + strand, within Dshi_0891 at 907.468 kb on + strand, within Dshi_0891 at 907.477 kb on - strand, within Dshi_0891 at 907.526 kb on + strand, within Dshi_0891 at 907.577 kb on - strand, within Dshi_0891 at 907.577 kb on - strand, within Dshi_0891 at 907.606 kb on - strand, within Dshi_0891 at 907.634 kb on - strand, within Dshi_0891 at 907.660 kb on + strand at 907.696 kb on + strand at 907.696 kb on + strand at 907.696 kb on + strand at 907.696 kb on + strand at 907.711 kb on - strand at 907.737 kb on + strand at 907.752 kb on - strand at 907.752 kb on - strand at 907.759 kb on + strand at 907.759 kb on - strand at 907.794 kb on + strand at 907.802 kb on - strand at 907.802 kb on - strand at 907.802 kb on - strand at 907.814 kb on + strand at 907.814 kb on + strand at 907.835 kb on - strand at 907.849 kb on + strand at 907.849 kb on + strand at 907.849 kb on + strand at 907.849 kb on + strand at 907.849 kb on + strand at 907.849 kb on + strand at 907.849 kb on + strand at 907.849 kb on + strand at 907.849 kb on + strand at 907.849 kb on + strand at 907.849 kb on + strand at 907.849 kb on + strand at 907.849 kb on + strand at 907.849 kb on + strand at 907.849 kb on + strand at 907.849 kb on + strand at 907.857 kb on - strand at 907.857 kb on - strand at 907.857 kb on - strand at 907.857 kb on - strand at 907.857 kb on - strand at 907.857 kb on - strand at 907.857 kb on - strand at 907.857 kb on - strand at 907.857 kb on - strand at 907.857 kb on - strand at 907.857 kb on - strand at 907.857 kb on - strand at 907.857 kb on - strand at 907.857 kb on - strand at 907.857 kb on - strand at 907.857 kb on - strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.864 kb on + strand at 907.872 kb on - strand at 907.872 kb on - strand at 907.872 kb on - strand at 907.872 kb on - strand at 907.872 kb on - strand at 907.872 kb on - strand at 907.872 kb on - strand at 907.872 kb on - strand at 907.872 kb on - strand at 907.872 kb on - strand at 907.872 kb on - strand at 907.874 kb on + strand at 907.896 kb on + strand at 907.912 kb on + strand at 907.920 kb on - strand at 907.922 kb on + strand at 907.922 kb on + strand at 907.927 kb on + strand at 907.930 kb on - strand at 907.968 kb on + strand at 907.989 kb on + strand at 907.989 kb on + strand at 907.989 kb on + strand at 907.989 kb on + strand at 907.997 kb on - strand at 907.997 kb on - strand at 907.997 kb on - strand at 907.997 kb on - strand at 907.997 kb on - strand at 907.997 kb on - strand at 908.007 kb on - strand at 908.020 kb on + strand at 908.022 kb on - strand at 908.023 kb on - strand at 908.035 kb on + strand at 908.062 kb on + strand at 908.064 kb on + strand at 908.069 kb on + strand at 908.069 kb on + strand at 908.069 kb on + strand at 908.074 kb on + strand at 908.077 kb on - strand at 908.077 kb on - strand at 908.077 kb on - strand at 908.086 kb on + strand at 908.086 kb on + strand at 908.086 kb on + strand at 908.094 kb on - strand at 908.094 kb on - strand at 908.107 kb on - strand at 908.115 kb on + strand at 908.115 kb on + strand at 908.124 kb on + strand at 908.124 kb on + strand at 908.124 kb on + strand at 908.124 kb on + strand at 908.124 kb on + strand at 908.124 kb on + strand at 908.127 kb on - strand at 908.129 kb on + strand at 908.129 kb on + strand at 908.129 kb on + strand at 908.129 kb on + strand at 908.129 kb on + strand at 908.132 kb on - strand at 908.132 kb on - strand at 908.137 kb on - strand at 908.137 kb on - strand at 908.149 kb on + strand at 908.149 kb on + strand at 908.152 kb on - strand at 908.157 kb on + strand at 908.157 kb on - strand at 908.159 kb on - strand at 908.167 kb on + strand at 908.167 kb on + strand at 908.175 kb on - strand at 908.180 kb on - strand, within Dshi_0892 at 908.218 kb on + strand, within Dshi_0892 at 908.218 kb on - strand, within Dshi_0892 at 908.228 kb on + strand, within Dshi_0892 at 908.249 kb on + strand, within Dshi_0892 at 908.249 kb on + strand, within Dshi_0892 at 908.249 kb on + strand, within Dshi_0892 at 908.249 kb on + strand, within Dshi_0892 at 908.257 kb on - strand, within Dshi_0892 at 908.259 kb on + strand, within Dshi_0892 at 908.265 kb on + strand, within Dshi_0892 at 908.272 kb on + strand, within Dshi_0892 at 908.272 kb on + strand, within Dshi_0892 at 908.280 kb on - strand, within Dshi_0892 at 908.283 kb on + strand, within Dshi_0892 at 908.309 kb on - strand, within Dshi_0892 at 908.344 kb on - strand, within Dshi_0892 at 908.359 kb on - strand, within Dshi_0892 at 908.405 kb on + strand, within Dshi_0892 at 908.413 kb on - strand, within Dshi_0892 at 908.446 kb on - strand, within Dshi_0892 at 908.494 kb on + strand, within Dshi_0892 at 908.503 kb on - strand, within Dshi_0892 at 908.521 kb on + strand, within Dshi_0892 at 908.526 kb on + strand, within Dshi_0892 at 908.537 kb on + strand, within Dshi_0892 at 908.594 kb on + strand, within Dshi_0892 at 908.599 kb on + strand, within Dshi_0892 at 908.619 kb on + strand, within Dshi_0892 at 908.641 kb on - strand, within Dshi_0892 at 908.655 kb on - strand, within Dshi_0892 at 908.714 kb on - strand, within Dshi_0892
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 905,708 - Dshi_0890 0.13 -0.2 905,715 - Dshi_0890 0.13 +0.1 905,802 - Dshi_0890 0.22 -0.7 905,808 + Dshi_0890 0.23 -1.1 905,859 + Dshi_0890 0.28 -1.0 905,867 - Dshi_0890 0.29 +0.4 905,948 + Dshi_0890 0.37 -0.4 905,954 - Dshi_0890 0.38 -0.4 905,956 - Dshi_0890 0.38 +0.1 905,968 - Dshi_0890 0.39 +1.3 906,003 + Dshi_0890 0.42 -0.1 906,013 + Dshi_0890 0.44 -2.1 906,026 + Dshi_0890 0.45 -0.8 906,026 - Dshi_0890 0.45 +0.1 906,245 + Dshi_0890 0.67 +0.2 906,258 - Dshi_0890 0.68 -0.0 906,258 - Dshi_0890 0.68 +0.2 906,258 - Dshi_0890 0.68 -0.2 906,281 - Dshi_0890 0.70 +0.0 906,324 - Dshi_0890 0.75 +0.2 906,468 - Dshi_0890 0.89 +0.4 906,501 - +0.0 906,512 - -0.6 906,747 - -0.7 906,755 + -1.3 906,776 - Dshi_0891 0.10 +0.2 907,089 + Dshi_0891 0.39 -0.8 907,097 - Dshi_0891 0.40 -1.3 907,187 - Dshi_0891 0.48 -3.1 907,189 + Dshi_0891 0.48 -1.4 907,194 + Dshi_0891 0.49 -1.6 907,244 + Dshi_0891 0.53 -1.5 907,310 + Dshi_0891 0.59 -0.8 907,323 - Dshi_0891 0.61 -1.1 907,400 + Dshi_0891 0.68 -1.6 907,448 + Dshi_0891 0.72 +1.2 907,455 - Dshi_0891 0.73 -1.6 907,468 + Dshi_0891 0.74 -1.3 907,468 + Dshi_0891 0.74 -1.4 907,477 - Dshi_0891 0.75 -1.4 907,526 + Dshi_0891 0.79 -0.3 907,577 - Dshi_0891 0.84 -3.2 907,577 - Dshi_0891 0.84 -1.6 907,606 - Dshi_0891 0.87 -0.6 907,634 - Dshi_0891 0.89 -1.0 907,660 + -2.1 907,696 + -1.0 907,696 + -1.6 907,696 + -2.0 907,696 + -1.0 907,711 - -0.6 907,737 + -2.3 907,752 - -0.1 907,752 - -0.1 907,759 + -0.2 907,759 - -1.1 907,794 + +1.0 907,802 - +0.7 907,802 - -0.5 907,802 - -0.1 907,814 + -0.6 907,814 + -0.8 907,835 - +0.4 907,849 + -0.3 907,849 + -0.6 907,849 + -0.2 907,849 + -0.4 907,849 + -0.6 907,849 + +0.7 907,849 + +0.1 907,849 + +0.6 907,849 + +0.4 907,849 + +0.2 907,849 + -0.0 907,849 + +0.4 907,849 + +1.0 907,849 + +0.2 907,849 + +0.1 907,849 + +0.1 907,857 - +0.3 907,857 - -0.1 907,857 - -0.6 907,857 - -2.2 907,857 - +0.7 907,857 - +0.5 907,857 - -1.1 907,857 - -0.6 907,857 - -0.6 907,857 - +0.2 907,857 - +0.6 907,857 - -0.6 907,857 - +1.4 907,857 - +0.1 907,857 - -0.0 907,857 - +0.7 907,864 + +0.4 907,864 + -1.8 907,864 + +0.7 907,864 + +1.1 907,864 + -0.2 907,864 + -0.1 907,864 + -0.1 907,864 + +0.3 907,864 + +0.6 907,864 + +0.2 907,864 + -0.8 907,864 + +0.2 907,864 + +1.9 907,864 + +0.3 907,864 + +1.2 907,864 + +0.2 907,864 + +2.3 907,864 + -0.5 907,864 + -0.0 907,864 + -0.7 907,864 + -0.0 907,864 + +0.5 907,864 + +0.2 907,864 + -2.5 907,864 + +0.6 907,864 + -0.3 907,864 + +0.4 907,864 + +1.0 907,864 + -0.6 907,864 + +0.2 907,864 + -2.1 907,872 - +0.0 907,872 - -1.0 907,872 - -3.2 907,872 - +0.4 907,872 - +1.2 907,872 - -0.8 907,872 - +0.7 907,872 - -0.2 907,872 - -1.5 907,872 - -0.7 907,872 - -0.5 907,874 + +1.3 907,896 + +1.5 907,912 + +1.5 907,920 - +0.0 907,922 + -0.6 907,922 + +0.2 907,927 + +1.0 907,930 - +0.4 907,968 + +1.0 907,989 + -0.3 907,989 + -1.4 907,989 + +0.2 907,989 + -0.2 907,997 - +0.1 907,997 - -1.1 907,997 - +0.9 907,997 - +1.4 907,997 - -0.2 907,997 - -2.1 908,007 - -0.2 908,020 + -0.8 908,022 - -1.2 908,023 - -0.6 908,035 + -0.6 908,062 + -1.0 908,064 + +0.3 908,069 + -0.0 908,069 + +0.2 908,069 + -0.6 908,074 + -0.5 908,077 - -1.3 908,077 - +0.8 908,077 - -0.4 908,086 + +1.3 908,086 + +0.4 908,086 + -0.1 908,094 - +0.5 908,094 - +0.8 908,107 - +0.6 908,115 + +1.6 908,115 + -0.4 908,124 + +0.2 908,124 + +0.6 908,124 + +1.4 908,124 + +0.5 908,124 + -0.5 908,124 + -0.4 908,127 - +1.0 908,129 + +0.5 908,129 + -0.1 908,129 + +0.9 908,129 + -0.7 908,129 + +0.3 908,132 - -0.5 908,132 - -1.2 908,137 - -0.8 908,137 - -0.8 908,149 + -0.4 908,149 + -0.4 908,152 - +1.4 908,157 + -0.4 908,157 - -0.4 908,159 - +0.3 908,167 + -0.8 908,167 + +0.9 908,175 - +0.7 908,180 - Dshi_0892 0.10 +1.0 908,218 + Dshi_0892 0.14 +0.3 908,218 - Dshi_0892 0.14 -1.5 908,228 + Dshi_0892 0.15 +0.1 908,249 + Dshi_0892 0.18 -0.6 908,249 + Dshi_0892 0.18 +0.2 908,249 + Dshi_0892 0.18 +1.6 908,249 + Dshi_0892 0.18 -0.7 908,257 - Dshi_0892 0.19 -0.1 908,259 + Dshi_0892 0.19 -1.0 908,265 + Dshi_0892 0.19 +0.7 908,272 + Dshi_0892 0.20 +0.1 908,272 + Dshi_0892 0.20 +0.8 908,280 - Dshi_0892 0.21 -0.5 908,283 + Dshi_0892 0.21 -0.6 908,309 - Dshi_0892 0.24 +0.4 908,344 - Dshi_0892 0.28 +1.2 908,359 - Dshi_0892 0.29 +0.7 908,405 + Dshi_0892 0.34 +0.8 908,413 - Dshi_0892 0.35 +0.6 908,446 - Dshi_0892 0.39 -0.4 908,494 + Dshi_0892 0.44 -0.8 908,503 - Dshi_0892 0.45 -0.2 908,521 + Dshi_0892 0.47 +0.0 908,526 + Dshi_0892 0.47 +0.3 908,537 + Dshi_0892 0.49 -0.2 908,594 + Dshi_0892 0.55 +0.7 908,599 + Dshi_0892 0.55 +0.4 908,619 + Dshi_0892 0.57 -0.3 908,641 - Dshi_0892 0.60 +0.7 908,655 - Dshi_0892 0.61 -0.1 908,714 - Dshi_0892 0.68 +0.2
Or see this region's nucleotide sequence