Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0845 and Dshi_0846 are separated by 34 nucleotides Dshi_0846 and Dshi_0847 overlap by 4 nucleotides Dshi_0847 and Dshi_0848 overlap by 4 nucleotides Dshi_0848 and Dshi_0849 are separated by 125 nucleotides
Dshi_0845: Dshi_0845 - MATE efflux family protein (RefSeq), at 854,790 to 856,109
_0845
Dshi_0846: Dshi_0846 - arsenate reductase (RefSeq), at 856,144 to 856,491
_0846
Dshi_0847: Dshi_0847 - Dihydroorotate oxidase (RefSeq), at 856,488 to 857,546
_0847
Dshi_0848: Dshi_0848 - protein of unknown function DUF952 (RefSeq), at 857,543 to 857,878
_0848
Dshi_0849: Dshi_0849 - 5'-Nucleotidase domain protein (RefSeq), at 858,004 to 859,593
_0849
Position (kb) 856
857
858 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 855.515 kb on - strand, within Dshi_0845 at 855.534 kb on + strand, within Dshi_0845 at 855.655 kb on + strand, within Dshi_0845 at 855.732 kb on + strand, within Dshi_0845 at 855.771 kb on - strand, within Dshi_0845 at 855.861 kb on - strand, within Dshi_0845 at 856.087 kb on - strand at 856.284 kb on - strand, within Dshi_0846 at 856.314 kb on + strand, within Dshi_0846 at 856.345 kb on + strand, within Dshi_0846 at 856.345 kb on + strand, within Dshi_0846 at 856.353 kb on - strand, within Dshi_0846 at 856.429 kb on - strand, within Dshi_0846 at 856.439 kb on - strand, within Dshi_0846 at 856.475 kb on + strand at 856.482 kb on - strand at 856.505 kb on + strand at 856.560 kb on + strand at 856.608 kb on - strand, within Dshi_0847 at 856.618 kb on - strand, within Dshi_0847 at 856.622 kb on + strand, within Dshi_0847 at 856.623 kb on - strand, within Dshi_0847 at 856.672 kb on - strand, within Dshi_0847 at 856.968 kb on - strand, within Dshi_0847 at 856.968 kb on - strand, within Dshi_0847 at 856.969 kb on + strand, within Dshi_0847 at 857.103 kb on - strand, within Dshi_0847 at 857.277 kb on + strand, within Dshi_0847 at 857.341 kb on - strand, within Dshi_0847 at 857.388 kb on - strand, within Dshi_0847 at 857.443 kb on - strand at 857.463 kb on - strand at 857.611 kb on - strand, within Dshi_0848 at 857.673 kb on - strand, within Dshi_0848 at 857.934 kb on + strand at 858.046 kb on - strand at 858.051 kb on - strand at 858.194 kb on - strand, within Dshi_0849 at 858.307 kb on - strand, within Dshi_0849
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 855,515 - Dshi_0845 0.55 +0.5 855,534 + Dshi_0845 0.56 -0.8 855,655 + Dshi_0845 0.66 +0.3 855,732 + Dshi_0845 0.71 -1.4 855,771 - Dshi_0845 0.74 -0.4 855,861 - Dshi_0845 0.81 -1.4 856,087 - -1.1 856,284 - Dshi_0846 0.40 -0.4 856,314 + Dshi_0846 0.49 +0.4 856,345 + Dshi_0846 0.58 +0.3 856,345 + Dshi_0846 0.58 +0.2 856,353 - Dshi_0846 0.60 -0.0 856,429 - Dshi_0846 0.82 -1.3 856,439 - Dshi_0846 0.85 -0.6 856,475 + -0.1 856,482 - -0.1 856,505 + -0.8 856,560 + -2.1 856,608 - Dshi_0847 0.11 -1.8 856,618 - Dshi_0847 0.12 -3.6 856,622 + Dshi_0847 0.13 -1.1 856,623 - Dshi_0847 0.13 -1.1 856,672 - Dshi_0847 0.17 -2.5 856,968 - Dshi_0847 0.45 -3.5 856,968 - Dshi_0847 0.45 -1.4 856,969 + Dshi_0847 0.45 -2.4 857,103 - Dshi_0847 0.58 -1.1 857,277 + Dshi_0847 0.75 -1.5 857,341 - Dshi_0847 0.81 -1.7 857,388 - Dshi_0847 0.85 -1.9 857,443 - -1.2 857,463 - -1.3 857,611 - Dshi_0848 0.20 -1.1 857,673 - Dshi_0848 0.39 -0.9 857,934 + +0.5 858,046 - -0.1 858,051 - -1.2 858,194 - Dshi_0849 0.12 +1.3 858,307 - Dshi_0849 0.19 +0.2
Or see this region's nucleotide sequence