Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0789 and Dshi_0790 are separated by 142 nucleotides Dshi_0790 and Dshi_0791 are separated by 122 nucleotides Dshi_0791 and Dshi_0792 are separated by 58 nucleotides
Dshi_0789: Dshi_0789 - potassium efflux system protein (RefSeq), at 794,130 to 796,142
_0789
Dshi_0790: Dshi_0790 - hypothetical protein (RefSeq), at 796,285 to 798,666
_0790
Dshi_0791: Dshi_0791 - protein of unknown function DUF541 (RefSeq), at 798,789 to 799,526
_0791
Dshi_0792: Dshi_0792 - hypothetical protein (RefSeq), at 799,585 to 799,959
_0792
Position (kb) 796
797
798
799 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 795.346 kb on + strand, within Dshi_0789 at 795.357 kb on - strand, within Dshi_0789 at 795.458 kb on + strand, within Dshi_0789 at 795.466 kb on - strand, within Dshi_0789 at 795.484 kb on - strand, within Dshi_0789 at 795.850 kb on + strand, within Dshi_0789 at 795.850 kb on + strand, within Dshi_0789 at 796.016 kb on - strand at 796.076 kb on - strand at 796.198 kb on - strand at 796.266 kb on + strand at 796.330 kb on + strand at 796.338 kb on - strand at 796.815 kb on - strand, within Dshi_0790 at 796.936 kb on + strand, within Dshi_0790 at 797.374 kb on - strand, within Dshi_0790 at 797.374 kb on - strand, within Dshi_0790 at 797.625 kb on + strand, within Dshi_0790 at 798.010 kb on - strand, within Dshi_0790 at 798.026 kb on + strand, within Dshi_0790 at 798.286 kb on + strand, within Dshi_0790 at 798.289 kb on - strand, within Dshi_0790 at 798.352 kb on - strand, within Dshi_0790 at 798.449 kb on - strand at 798.515 kb on - strand at 798.781 kb on - strand at 798.824 kb on + strand at 798.869 kb on + strand, within Dshi_0791 at 799.180 kb on + strand, within Dshi_0791 at 799.588 kb on + strand at 799.657 kb on - strand, within Dshi_0792
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 795,346 + Dshi_0789 0.60 -0.4 795,357 - Dshi_0789 0.61 -0.9 795,458 + Dshi_0789 0.66 -0.2 795,466 - Dshi_0789 0.66 +0.7 795,484 - Dshi_0789 0.67 -0.0 795,850 + Dshi_0789 0.85 -2.0 795,850 + Dshi_0789 0.85 +0.5 796,016 - -1.8 796,076 - +0.6 796,198 - +0.7 796,266 + -0.0 796,330 + -1.8 796,338 - -1.8 796,815 - Dshi_0790 0.22 -0.6 796,936 + Dshi_0790 0.27 +1.4 797,374 - Dshi_0790 0.46 -0.8 797,374 - Dshi_0790 0.46 -0.1 797,625 + Dshi_0790 0.56 -0.6 798,010 - Dshi_0790 0.72 +0.5 798,026 + Dshi_0790 0.73 +0.0 798,286 + Dshi_0790 0.84 -0.5 798,289 - Dshi_0790 0.84 +0.4 798,352 - Dshi_0790 0.87 -0.1 798,449 - +0.1 798,515 - +0.7 798,781 - -0.4 798,824 + -1.4 798,869 + Dshi_0791 0.11 +0.3 799,180 + Dshi_0791 0.53 -0.2 799,588 + +0.8 799,657 - Dshi_0792 0.19 -2.8
Or see this region's nucleotide sequence