Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0651 and Dshi_0652 are separated by 20 nucleotides Dshi_0652 and Dshi_0653 are separated by 45 nucleotides Dshi_0653 and Dshi_0654 are separated by 123 nucleotides Dshi_0654 and Dshi_0655 are separated by 250 nucleotides
Dshi_0651: Dshi_0651 - NUDIX hydrolase (RefSeq), at 653,737 to 654,693
_0651
Dshi_0652: Dshi_0652 - hypothetical protein (RefSeq), at 654,714 to 655,202
_0652
Dshi_0653: Dshi_0653 - Prephenate dehydratase (RefSeq), at 655,248 to 656,090
_0653
Dshi_0654: Dshi_0654 - cytochrome c class I (RefSeq), at 656,214 to 656,738
_0654
Dshi_0655: Dshi_0655 - extracellular solute-binding protein family 5 (RefSeq), at 656,989 to 658,890
_0655
Position (kb) 655
656
657 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 654.407 kb on - strand, within Dshi_0651 at 654.409 kb on + strand, within Dshi_0651 at 654.528 kb on - strand, within Dshi_0651 at 654.539 kb on + strand, within Dshi_0651 at 654.776 kb on - strand, within Dshi_0652 at 654.840 kb on + strand, within Dshi_0652 at 654.944 kb on + strand, within Dshi_0652 at 655.036 kb on + strand, within Dshi_0652 at 655.044 kb on - strand, within Dshi_0652 at 655.063 kb on + strand, within Dshi_0652 at 655.158 kb on - strand at 655.651 kb on - strand, within Dshi_0653 at 655.753 kb on + strand, within Dshi_0653 at 655.758 kb on + strand, within Dshi_0653 at 655.763 kb on + strand, within Dshi_0653 at 655.767 kb on + strand, within Dshi_0653 at 655.777 kb on + strand, within Dshi_0653 at 655.785 kb on - strand, within Dshi_0653 at 655.799 kb on - strand, within Dshi_0653 at 655.985 kb on - strand, within Dshi_0653 at 655.993 kb on + strand, within Dshi_0653 at 656.273 kb on - strand, within Dshi_0654 at 656.273 kb on - strand, within Dshi_0654 at 656.564 kb on - strand, within Dshi_0654 at 656.588 kb on + strand, within Dshi_0654 at 656.691 kb on + strand at 656.776 kb on - strand at 656.861 kb on + strand at 656.869 kb on - strand at 656.930 kb on + strand at 656.933 kb on - strand at 656.945 kb on - strand at 656.973 kb on + strand at 656.996 kb on + strand at 657.044 kb on + strand at 657.059 kb on + strand at 657.067 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 654,407 - Dshi_0651 0.70 -0.0 654,409 + Dshi_0651 0.70 +0.4 654,528 - Dshi_0651 0.83 +0.2 654,539 + Dshi_0651 0.84 -0.1 654,776 - Dshi_0652 0.13 +0.2 654,840 + Dshi_0652 0.26 -0.1 654,944 + Dshi_0652 0.47 -0.9 655,036 + Dshi_0652 0.66 +0.2 655,044 - Dshi_0652 0.67 +0.2 655,063 + Dshi_0652 0.71 +0.0 655,158 - -0.8 655,651 - Dshi_0653 0.48 -3.1 655,753 + Dshi_0653 0.60 -2.5 655,758 + Dshi_0653 0.60 -3.6 655,763 + Dshi_0653 0.61 -1.5 655,767 + Dshi_0653 0.62 -2.8 655,777 + Dshi_0653 0.63 -3.7 655,785 - Dshi_0653 0.64 -1.7 655,799 - Dshi_0653 0.65 -4.6 655,985 - Dshi_0653 0.87 -1.8 655,993 + Dshi_0653 0.88 -0.8 656,273 - Dshi_0654 0.11 +0.2 656,273 - Dshi_0654 0.11 -0.5 656,564 - Dshi_0654 0.67 -0.9 656,588 + Dshi_0654 0.71 +0.0 656,691 + -0.4 656,776 - +0.6 656,861 + +0.1 656,869 - -2.3 656,930 + +0.9 656,933 - +0.1 656,945 - -0.1 656,973 + -0.9 656,996 + +1.3 657,044 + -0.4 657,059 + -0.1 657,067 - +0.2
Or see this region's nucleotide sequence