Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0311 and Dshi_0312 are separated by 56 nucleotides Dshi_0312 and Dshi_0313 are separated by 179 nucleotides Dshi_0313 and Dshi_0314 are separated by 82 nucleotides Dshi_0314 and Dshi_0315 overlap by 4 nucleotides
Dshi_0311: Dshi_0311 - transcriptional regulator, LuxR family (RefSeq), at 300,364 to 300,975
_0311
Dshi_0312: Dshi_0312 - N-acyl-L-homoserine lactone synthetase-like protein (RefSeq), at 301,032 to 301,619
_0312
Dshi_0313: Dshi_0313 - AAA ATPase central domain protein (RefSeq), at 301,799 to 303,109
_0313
Dshi_0314: Dshi_0314 - Camphor resistance CrcB protein (RefSeq), at 303,192 to 303,521
_0314
Dshi_0315: Dshi_0315 - pseudouridine synthase, RluA family (RefSeq), at 303,518 to 304,564
_0315
Position (kb) 301
302
303
304 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 300.804 kb on + strand, within Dshi_0311 at 300.915 kb on - strand at 300.965 kb on - strand at 300.977 kb on - strand at 300.978 kb on - strand at 301.022 kb on + strand at 301.112 kb on - strand, within Dshi_0312 at 301.137 kb on + strand, within Dshi_0312 at 301.182 kb on + strand, within Dshi_0312 at 301.220 kb on + strand, within Dshi_0312 at 301.239 kb on - strand, within Dshi_0312 at 301.323 kb on - strand, within Dshi_0312 at 301.436 kb on - strand, within Dshi_0312 at 301.453 kb on - strand, within Dshi_0312 at 301.479 kb on - strand, within Dshi_0312 at 301.604 kb on - strand at 301.604 kb on - strand at 301.636 kb on + strand at 301.636 kb on + strand at 301.777 kb on + strand at 301.808 kb on - strand at 301.884 kb on + strand at 301.903 kb on + strand at 302.083 kb on + strand, within Dshi_0313 at 302.267 kb on + strand, within Dshi_0313 at 302.275 kb on - strand, within Dshi_0313 at 302.613 kb on - strand, within Dshi_0313 at 302.636 kb on - strand, within Dshi_0313 at 302.638 kb on - strand, within Dshi_0313 at 302.721 kb on + strand, within Dshi_0313 at 302.785 kb on + strand, within Dshi_0313 at 302.929 kb on + strand, within Dshi_0313 at 302.932 kb on - strand, within Dshi_0313 at 302.937 kb on + strand, within Dshi_0313 at 302.942 kb on + strand, within Dshi_0313 at 302.948 kb on + strand, within Dshi_0313 at 303.029 kb on + strand at 303.408 kb on - strand, within Dshi_0314 at 303.442 kb on + strand, within Dshi_0314 at 303.497 kb on - strand at 303.672 kb on - strand, within Dshi_0315 at 303.837 kb on - strand, within Dshi_0315 at 303.981 kb on - strand, within Dshi_0315
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 300,804 + Dshi_0311 0.72 -1.1 300,915 - +0.1 300,965 - +0.7 300,977 - +0.5 300,978 - +0.8 301,022 + +1.2 301,112 - Dshi_0312 0.14 -0.1 301,137 + Dshi_0312 0.18 +0.4 301,182 + Dshi_0312 0.26 +0.6 301,220 + Dshi_0312 0.32 -1.6 301,239 - Dshi_0312 0.35 -0.4 301,323 - Dshi_0312 0.49 +1.1 301,436 - Dshi_0312 0.69 -0.1 301,453 - Dshi_0312 0.72 +0.4 301,479 - Dshi_0312 0.76 -0.4 301,604 - -0.5 301,604 - +0.1 301,636 + +0.8 301,636 + +0.3 301,777 + +0.7 301,808 - +0.7 301,884 + +1.5 301,903 + +0.8 302,083 + Dshi_0313 0.22 +0.5 302,267 + Dshi_0313 0.36 +1.0 302,275 - Dshi_0313 0.36 +1.2 302,613 - Dshi_0313 0.62 -2.1 302,636 - Dshi_0313 0.64 +0.6 302,638 - Dshi_0313 0.64 -0.1 302,721 + Dshi_0313 0.70 +0.0 302,785 + Dshi_0313 0.75 -3.1 302,929 + Dshi_0313 0.86 -0.7 302,932 - Dshi_0313 0.86 +1.2 302,937 + Dshi_0313 0.87 +0.5 302,942 + Dshi_0313 0.87 -0.6 302,948 + Dshi_0313 0.88 +0.1 303,029 + -0.6 303,408 - Dshi_0314 0.65 +0.1 303,442 + Dshi_0314 0.76 +1.8 303,497 - -0.2 303,672 - Dshi_0315 0.15 +0.9 303,837 - Dshi_0315 0.30 +0.1 303,981 - Dshi_0315 0.44 -0.2
Or see this region's nucleotide sequence