Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0100 and Dshi_0101 are separated by 398 nucleotides Dshi_0101 and Dshi_0102 are separated by 301 nucleotides
Dshi_0100: Dshi_0100 - transposase, putative (RefSeq), at 96,999 to 98,882
_0100
Dshi_0101: Dshi_0101 - hypothetical protein (RefSeq), at 99,281 to 99,538
_0101
Dshi_0102: Dshi_0102 - DNA polymerase III, alpha subunit (RefSeq), at 99,840 to 102,824
_0102
Position (kb) 99
100 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5
6 at 98.346 kb on + strand, within Dshi_0100 at 98.354 kb on - strand, within Dshi_0100 at 98.397 kb on + strand, within Dshi_0100 at 98.463 kb on + strand, within Dshi_0100 at 98.471 kb on - strand at 98.505 kb on - strand, within Dshi_0100 at 98.505 kb on - strand, within Dshi_0100 at 98.505 kb on - strand, within Dshi_0100 at 98.506 kb on - strand, within Dshi_0100 at 98.537 kb on + strand, within Dshi_0100 at 98.577 kb on + strand, within Dshi_0100 at 98.645 kb on - strand, within Dshi_0100 at 98.656 kb on - strand, within Dshi_0100 at 98.775 kb on + strand at 98.782 kb on - strand at 98.783 kb on - strand at 98.785 kb on + strand at 98.787 kb on + strand at 98.803 kb on - strand at 98.803 kb on - strand at 98.811 kb on + strand at 98.811 kb on + strand at 98.811 kb on + strand at 98.819 kb on + strand at 98.819 kb on - strand at 98.819 kb on - strand at 98.819 kb on - strand at 98.819 kb on - strand at 98.820 kb on + strand at 98.820 kb on + strand at 98.820 kb on + strand at 98.820 kb on + strand at 98.820 kb on + strand at 98.820 kb on + strand at 98.820 kb on + strand at 98.820 kb on + strand at 98.820 kb on + strand at 98.820 kb on + strand at 98.828 kb on - strand at 98.828 kb on - strand at 98.828 kb on - strand at 98.828 kb on - strand at 98.910 kb on + strand at 98.912 kb on + strand at 98.912 kb on + strand at 98.912 kb on + strand at 98.912 kb on + strand at 98.912 kb on + strand at 98.912 kb on + strand at 98.912 kb on + strand at 98.918 kb on + strand at 98.918 kb on - strand at 98.918 kb on - strand at 98.920 kb on - strand at 98.920 kb on - strand at 98.920 kb on - strand at 98.920 kb on - strand at 98.920 kb on - strand at 98.920 kb on - strand at 98.920 kb on - strand at 98.920 kb on - strand at 98.920 kb on - strand at 98.920 kb on - strand at 98.923 kb on + strand at 98.923 kb on + strand at 98.931 kb on - strand at 98.931 kb on - strand at 98.933 kb on + strand at 98.941 kb on - strand at 98.941 kb on - strand at 99.088 kb on + strand at 99.088 kb on + strand at 99.088 kb on + strand at 99.088 kb on + strand at 99.096 kb on - strand at 99.096 kb on - strand at 99.099 kb on - strand at 99.114 kb on + strand at 99.133 kb on + strand at 99.133 kb on + strand at 99.141 kb on + strand at 99.143 kb on + strand at 99.149 kb on + strand at 99.149 kb on - strand at 99.149 kb on - strand at 99.157 kb on + strand at 99.157 kb on - strand at 99.172 kb on + strand at 99.172 kb on + strand at 99.172 kb on + strand at 99.172 kb on + strand at 99.175 kb on - strand at 99.180 kb on - strand at 99.180 kb on - strand at 99.180 kb on - strand at 99.182 kb on + strand at 99.182 kb on + strand at 99.184 kb on + strand at 99.192 kb on + strand at 99.201 kb on - strand at 99.220 kb on + strand at 99.225 kb on - strand at 99.234 kb on + strand at 99.235 kb on + strand at 99.235 kb on - strand at 99.244 kb on + strand at 99.251 kb on - strand at 99.251 kb on - strand at 99.261 kb on + strand at 99.261 kb on + strand at 99.261 kb on + strand at 99.261 kb on + strand at 99.263 kb on + strand at 99.269 kb on - strand at 99.269 kb on - strand at 99.271 kb on - strand at 99.271 kb on - strand at 99.283 kb on + strand at 99.324 kb on - strand, within Dshi_0101 at 99.343 kb on + strand, within Dshi_0101 at 99.348 kb on + strand, within Dshi_0101 at 99.370 kb on - strand, within Dshi_0101 at 99.386 kb on + strand, within Dshi_0101 at 99.429 kb on + strand, within Dshi_0101 at 99.453 kb on + strand, within Dshi_0101 at 99.455 kb on + strand, within Dshi_0101 at 99.461 kb on - strand, within Dshi_0101 at 99.465 kb on + strand, within Dshi_0101 at 99.465 kb on + strand, within Dshi_0101 at 99.473 kb on - strand, within Dshi_0101 at 99.473 kb on - strand, within Dshi_0101 at 99.473 kb on - strand, within Dshi_0101 at 99.473 kb on - strand, within Dshi_0101 at 99.489 kb on + strand, within Dshi_0101 at 99.489 kb on + strand, within Dshi_0101 at 99.525 kb on + strand at 99.576 kb on + strand at 99.586 kb on - strand at 99.627 kb on + strand at 99.693 kb on - strand at 99.693 kb on - strand at 99.694 kb on - strand at 99.734 kb on - strand at 99.744 kb on - strand at 99.757 kb on + strand at 99.766 kb on + strand at 99.782 kb on - strand at 99.897 kb on + strand at 99.921 kb on + strand at 99.924 kb on + strand at 99.924 kb on + strand at 99.924 kb on + strand at 99.924 kb on + strand at 99.924 kb on + strand at 99.932 kb on - strand at 99.933 kb on - strand at 99.953 kb on - strand at 99.968 kb on + strand at 99.983 kb on + strand at 99.986 kb on - strand at 100.001 kb on - strand at 100.064 kb on + strand at 100.064 kb on + strand at 100.064 kb on + strand at 100.072 kb on - strand at 100.072 kb on - strand at 100.073 kb on - strand at 100.077 kb on - strand at 100.188 kb on + strand, within Dshi_0102 at 100.188 kb on + strand, within Dshi_0102 at 100.188 kb on + strand, within Dshi_0102 at 100.196 kb on - strand, within Dshi_0102 at 100.196 kb on - strand, within Dshi_0102 at 100.196 kb on - strand, within Dshi_0102 at 100.200 kb on - strand, within Dshi_0102 at 100.208 kb on + strand, within Dshi_0102 at 100.216 kb on - strand, within Dshi_0102 at 100.244 kb on - strand, within Dshi_0102 at 100.334 kb on + strand, within Dshi_0102 at 100.342 kb on - strand, within Dshi_0102 at 100.344 kb on + strand, within Dshi_0102 at 100.393 kb on + strand, within Dshi_0102 at 100.425 kb on + strand, within Dshi_0102 at 100.463 kb on + strand, within Dshi_0102 at 100.470 kb on + strand, within Dshi_0102 at 100.479 kb on - strand, within Dshi_0102
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 98,346 + Dshi_0100 0.71 +1.5 98,354 - Dshi_0100 0.72 +0.9 98,397 + Dshi_0100 0.74 +0.5 98,463 + Dshi_0100 0.78 +0.7 98,471 - +0.2 98,505 - Dshi_0100 0.80 +0.9 98,505 - Dshi_0100 0.80 -1.9 98,505 - Dshi_0100 0.80 -0.3 98,506 - Dshi_0100 0.80 +0.6 98,537 + Dshi_0100 0.82 -1.0 98,577 + Dshi_0100 0.84 -0.2 98,645 - Dshi_0100 0.87 +1.6 98,656 - Dshi_0100 0.88 +0.1 98,775 + +0.6 98,782 - -0.1 98,783 - +0.9 98,785 + -1.5 98,787 + +0.4 98,803 - -1.6 98,803 - +0.5 98,811 + +0.4 98,811 + +0.1 98,811 + -0.8 98,819 + -0.9 98,819 - -0.5 98,819 - +0.4 98,819 - +1.3 98,819 - +0.0 98,820 + +1.4 98,820 + -0.8 98,820 + +0.5 98,820 + -1.8 98,820 + -0.1 98,820 + -0.9 98,820 + -0.8 98,820 + +0.3 98,820 + -0.1 98,820 + +0.8 98,828 - +0.2 98,828 - +0.9 98,828 - +0.9 98,828 - +0.4 98,910 + +1.0 98,912 + -1.2 98,912 + +1.1 98,912 + -0.0 98,912 + +0.2 98,912 + +0.3 98,912 + -1.6 98,912 + -1.6 98,918 + -0.7 98,918 - -0.2 98,918 - -1.5 98,920 - -0.1 98,920 - -1.3 98,920 - +0.2 98,920 - +0.6 98,920 - -0.9 98,920 - -0.1 98,920 - -0.4 98,920 - -0.6 98,920 - +0.3 98,920 - +0.8 98,923 + -0.0 98,923 + -0.8 98,931 - -0.3 98,931 - -1.2 98,933 + -0.0 98,941 - +0.3 98,941 - +1.7 99,088 + +1.5 99,088 + -1.8 99,088 + -3.5 99,088 + +1.2 99,096 - -2.8 99,096 - -2.9 99,099 - +0.2 99,114 + -1.9 99,133 + -3.8 99,133 + -2.6 99,141 + -3.1 99,143 + -2.9 99,149 + -2.9 99,149 - -0.4 99,149 - +0.7 99,157 + -4.0 99,157 - -1.5 99,172 + -2.5 99,172 + -4.6 99,172 + -1.7 99,172 + +0.2 99,175 - -0.4 99,180 - -2.1 99,180 - -3.5 99,180 - -3.4 99,182 + -3.0 99,182 + -0.4 99,184 + -1.4 99,192 + -1.8 99,201 - -1.9 99,220 + -2.8 99,225 - -1.6 99,234 + -2.0 99,235 + -2.6 99,235 - -1.9 99,244 + -2.5 99,251 - -4.9 99,251 - -3.2 99,261 + +0.3 99,261 + -1.9 99,261 + +0.4 99,261 + -0.7 99,263 + -1.8 99,269 - -1.1 99,269 - -1.9 99,271 - -2.7 99,271 - +5.8 99,283 + -1.9 99,324 - Dshi_0101 0.17 -3.4 99,343 + Dshi_0101 0.24 -2.2 99,348 + Dshi_0101 0.26 -0.8 99,370 - Dshi_0101 0.34 -2.1 99,386 + Dshi_0101 0.41 -3.6 99,429 + Dshi_0101 0.57 -4.1 99,453 + Dshi_0101 0.67 -2.7 99,455 + Dshi_0101 0.67 -1.1 99,461 - Dshi_0101 0.70 -3.4 99,465 + Dshi_0101 0.71 -0.1 99,465 + Dshi_0101 0.71 -2.7 99,473 - Dshi_0101 0.74 -2.9 99,473 - Dshi_0101 0.74 -3.9 99,473 - Dshi_0101 0.74 -0.8 99,473 - Dshi_0101 0.74 -0.4 99,489 + Dshi_0101 0.81 +1.0 99,489 + Dshi_0101 0.81 -1.1 99,525 + -1.7 99,576 + -0.4 99,586 - +2.0 99,627 + +1.0 99,693 - -1.8 99,693 - +0.2 99,694 - -0.0 99,734 - -0.9 99,744 - +0.9 99,757 + -0.4 99,766 + -0.2 99,782 - -0.6 99,897 + +0.1 99,921 + +1.0 99,924 + +0.3 99,924 + -3.6 99,924 + +0.3 99,924 + +0.1 99,924 + +0.1 99,932 - +0.1 99,933 - -0.1 99,953 - -0.2 99,968 + -1.5 99,983 + +0.2 99,986 - +0.2 100,001 - +0.4 100,064 + -0.3 100,064 + +0.3 100,064 + -0.0 100,072 - +0.1 100,072 - -0.5 100,073 - -0.0 100,077 - -0.5 100,188 + Dshi_0102 0.12 -0.9 100,188 + Dshi_0102 0.12 -0.0 100,188 + Dshi_0102 0.12 -0.3 100,196 - Dshi_0102 0.12 -0.2 100,196 - Dshi_0102 0.12 +0.3 100,196 - Dshi_0102 0.12 +0.2 100,200 - Dshi_0102 0.12 -0.4 100,208 + Dshi_0102 0.12 -0.2 100,216 - Dshi_0102 0.13 -0.6 100,244 - Dshi_0102 0.14 -0.2 100,334 + Dshi_0102 0.17 +0.2 100,342 - Dshi_0102 0.17 +0.9 100,344 + Dshi_0102 0.17 +0.2 100,393 + Dshi_0102 0.19 -0.2 100,425 + Dshi_0102 0.20 -0.1 100,463 + Dshi_0102 0.21 -0.1 100,470 + Dshi_0102 0.21 +0.5 100,479 - Dshi_0102 0.21 -0.5
Or see this region's nucleotide sequence