Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2105

Experiment: MoYLS4 with 2,2' Dipyridyl 75uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2103 and DVU2104 overlap by 4 nucleotidesDVU2104 and DVU2105 are separated by 20 nucleotidesDVU2105 and flrC are separated by 168 nucleotides DVU2103: DVU2103 - iron-sulfur cluster-binding/ATPase domain protein (TIGR), at 2,197,890 to 2,198,753 DVU2103 DVU2104: DVU2104 - iron-sulfur cluster-binding/ATPase domain protein (TIGR), at 2,198,750 to 2,199,655 DVU2104 DVU2105: DVU2105 - hypothetical protein (TIGR), at 2,199,676 to 2,200,188 DVU2105 DVU2106: flrC - sigma-54 dependent transcriptional regulator (TIGR), at 2,200,357 to 2,201,733 flrC Position (kb) 2199 2200 2201Strain fitness (log2 ratio) -2 -1 0 1at 2199.765 kb on - strand, within DVU2105at 2199.787 kb on + strand, within DVU2105at 2199.787 kb on + strand, within DVU2105at 2199.787 kb on + strand, within DVU2105at 2199.787 kb on + strand, within DVU2105at 2199.831 kb on - strand, within DVU2105at 2199.831 kb on - strand, within DVU2105at 2200.062 kb on - strand, within DVU2105at 2200.101 kb on - strand, within DVU2105

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with 2,2' Dipyridyl 75uM
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2,199,765 - DVU2105 0.17 -0.5
2,199,787 + DVU2105 0.22 -0.2
2,199,787 + DVU2105 0.22 -0.3
2,199,787 + DVU2105 0.22 -1.1
2,199,787 + DVU2105 0.22 -2.5
2,199,831 - DVU2105 0.30 -1.1
2,199,831 - DVU2105 0.30 -1.9
2,200,062 - DVU2105 0.75 -1.4
2,200,101 - DVU2105 0.83 -0.1

Or see this region's nucleotide sequence