Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS23860

Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1 dpi

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1 dpi
2,072,067	+		RALBFv3_RS23855	0.35	-0.6
2,072,067	+		RALBFv3_RS23855	0.35	+0.2
2,072,067	+		RALBFv3_RS23855	0.35	-0.3
2,072,067	+		RALBFv3_RS23855	0.35	+2.0
2,072,068	-		RALBFv3_RS23855	0.35	-0.4
2,072,068	-		RALBFv3_RS23855	0.35	+1.0
2,072,068	-		RALBFv3_RS23855	0.35	+0.2
2,072,068	-		RALBFv3_RS23855	0.35	+2.0
2,072,068	-		RALBFv3_RS23855	0.35	-0.3
2,072,068	-		RALBFv3_RS23855	0.35	-0.2
2,072,068	-		RALBFv3_RS23855	0.35	+2.8
2,072,070	+		RALBFv3_RS23855	0.36	-0.6
2,072,070	+		RALBFv3_RS23855	0.36	-0.6
2,072,129	-		RALBFv3_RS23855	0.40	-1.8
2,072,133	+		RALBFv3_RS23855	0.40	+0.1
2,072,149	-		RALBFv3_RS23855	0.41	+0.3
2,072,331	+		RALBFv3_RS23855	0.55	+0.1
2,072,332	-		RALBFv3_RS23855	0.55	+0.4
2,072,350	+		RALBFv3_RS23855	0.56	+0.3
2,072,441	+		RALBFv3_RS23855	0.63	+0.5
2,072,441	+		RALBFv3_RS23855	0.63	-0.8
2,072,442	-		RALBFv3_RS23855	0.63	+0.2
2,072,451	+		RALBFv3_RS23855	0.63	-0.6
2,072,452	-		RALBFv3_RS23855	0.64	-0.1
2,072,499	-		RALBFv3_RS23855	0.67	+0.5
2,072,499	-		RALBFv3_RS23855	0.67	-0.3
2,072,499	-		RALBFv3_RS23855	0.67	-0.2
2,072,530	+		RALBFv3_RS23855	0.69	+0.1
2,072,530	+		RALBFv3_RS23855	0.69	+0.2
2,072,530	+		RALBFv3_RS23855	0.69	-0.3
2,072,530	+		RALBFv3_RS23855	0.69	+0.5
2,072,531	-		RALBFv3_RS23855	0.69	+0.3
2,072,543	+		RALBFv3_RS23855	0.70	+0.9
2,072,544	-		RALBFv3_RS23855	0.70	+0.3
2,072,544	-		RALBFv3_RS23855	0.70	+0.3
2,072,544	-		RALBFv3_RS23855	0.70	-0.9
2,072,668	-		RALBFv3_RS23855	0.79	-0.6
2,072,668	-		RALBFv3_RS23855	0.79	-0.2
2,072,668	-		RALBFv3_RS23855	0.79	-1.7
2,072,669	-		RALBFv3_RS23855	0.79	-0.9
2,072,691	+		RALBFv3_RS23855	0.81	-0.6
2,072,692	-		RALBFv3_RS23855	0.81	-0.1
2,072,722	+		RALBFv3_RS23855	0.83	+2.0
2,072,744	+		RALBFv3_RS23855	0.85	-0.4
2,072,744	+		RALBFv3_RS23855	0.85	-0.0
2,072,744	+		RALBFv3_RS23855	0.85	-0.0
2,072,745	-		RALBFv3_RS23855	0.85	+0.1
2,072,745	-		RALBFv3_RS23855	0.85	+0.1
2,072,765	+		RALBFv3_RS23855	0.86	-0.5
2,072,765	+		RALBFv3_RS23855	0.86	+1.0
2,072,765	+		RALBFv3_RS23855	0.86	+0.3
2,072,766	-		RALBFv3_RS23855	0.86	+0.4
2,072,766	-		RALBFv3_RS23855	0.86	+0.0
2,072,766	-		RALBFv3_RS23855	0.86	+0.9
2,072,766	-		RALBFv3_RS23855	0.86	-0.5
2,072,766	-		RALBFv3_RS23855	0.86	-0.8
2,072,766	-		RALBFv3_RS23855	0.86	+0.2
2,072,770	+		RALBFv3_RS23855	0.87	+0.0
2,072,771	-		RALBFv3_RS23855	0.87	+0.4
2,072,876	+				+0.8
2,072,876	+				+1.8
2,072,898	+				-0.5
2,072,898	+				+1.0
2,072,899	-				-0.3
2,072,942	+				+0.6
2,072,973	-				+0.3
2,072,973	-				+0.4
2,073,047	-				+0.4
2,073,081	+				+0.0
2,073,082	-				-0.1
2,073,125	+		RALBFv3_RS23860	0.11	+0.4
2,073,155	-		RALBFv3_RS23860	0.13	-0.7
2,073,214	-		RALBFv3_RS23860	0.19	-0.6
2,073,282	-		RALBFv3_RS23860	0.25	+0.3
2,073,301	+		RALBFv3_RS23860	0.26	+0.4
2,073,302	-		RALBFv3_RS23860	0.26	-0.1
2,073,346	-		RALBFv3_RS23860	0.30	-0.9
2,073,346	-		RALBFv3_RS23860	0.30	-0.1
2,073,346	-		RALBFv3_RS23860	0.30	+1.1
2,073,346	-		RALBFv3_RS23860	0.30	+1.3
2,073,357	+		RALBFv3_RS23860	0.31	-0.1
2,073,358	-		RALBFv3_RS23860	0.31	+0.3
2,073,404	+		RALBFv3_RS23860	0.35	-0.1
2,073,404	+		RALBFv3_RS23860	0.35	-0.1
2,073,445	+		RALBFv3_RS23860	0.39	-1.1
2,073,446	-		RALBFv3_RS23860	0.39	+0.6
2,073,446	-		RALBFv3_RS23860	0.39	-0.3
2,073,451	-		RALBFv3_RS23860	0.40	+0.3
2,073,480	+		RALBFv3_RS23860	0.42	+0.2
2,073,544	+		RALBFv3_RS23860	0.48	-0.3
2,073,585	+		RALBFv3_RS23860	0.52	-0.4
2,073,585	+		RALBFv3_RS23860	0.52	+0.7
2,073,586	-		RALBFv3_RS23860	0.52	+0.2
2,073,586	-		RALBFv3_RS23860	0.52	-0.2
2,073,586	-		RALBFv3_RS23860	0.52	+1.0
2,073,610	+		RALBFv3_RS23860	0.54	+0.4
2,073,611	-		RALBFv3_RS23860	0.54	+0.2
2,073,611	-		RALBFv3_RS23860	0.54	+3.0
2,073,611	-		RALBFv3_RS23860	0.54	+0.1
2,073,611	-		RALBFv3_RS23860	0.54	+0.4
2,073,611	-		RALBFv3_RS23860	0.54	+0.2
2,073,718	-		RALBFv3_RS23860	0.63	+3.0
2,073,718	-		RALBFv3_RS23860	0.63	+0.0
2,073,718	-		RALBFv3_RS23860	0.63	+0.3
2,073,727	-		RALBFv3_RS23860	0.64	+0.2
2,073,727	-		RALBFv3_RS23860	0.64	-0.3
2,073,757	+		RALBFv3_RS23860	0.67	-0.3
2,073,757	+		RALBFv3_RS23860	0.67	-0.4
2,073,758	-		RALBFv3_RS23860	0.67	-0.5
2,073,797	+		RALBFv3_RS23860	0.70	-0.3
2,073,797	+		RALBFv3_RS23860	0.70	-0.5
2,073,797	+		RALBFv3_RS23860	0.70	+0.5
2,073,797	+		RALBFv3_RS23860	0.70	-0.0
2,073,798	-		RALBFv3_RS23860	0.70	+0.3
2,073,798	-		RALBFv3_RS23860	0.70	+1.2
2,073,905	-		RALBFv3_RS23860	0.80	-0.4
2,073,909	+		RALBFv3_RS23860	0.80	+1.0
2,073,909	+		RALBFv3_RS23860	0.80	+0.4
2,073,909	+		RALBFv3_RS23860	0.80	+1.4
2,073,909	+		RALBFv3_RS23860	0.80	+0.4
2,073,910	-		RALBFv3_RS23860	0.80	+0.2
2,073,910	-		RALBFv3_RS23860	0.80	-0.3
2,073,911	-		RALBFv3_RS23860	0.80	+0.1
2,074,004	+		RALBFv3_RS23860	0.89	-0.5
2,074,004	+		RALBFv3_RS23860	0.89	-0.3
2,074,004	+		RALBFv3_RS23860	0.89	-0.3
2,074,005	-		RALBFv3_RS23860	0.89	-0.6
2,074,005	-		RALBFv3_RS23860	0.89	-0.1
2,074,009	+		RALBFv3_RS23860	0.89	+0.1
2,074,009	+		RALBFv3_RS23860	0.89	-0.6
2,074,009	+		RALBFv3_RS23860	0.89	-0.4
2,074,010	-		RALBFv3_RS23860	0.89	+0.3
2,074,012	+		RALBFv3_RS23860	0.89	-0.1
2,074,013	-		RALBFv3_RS23860	0.89	+0.6
2,074,106	-				-0.4
2,074,167	-				+0.2
2,074,205	+		RALBFv3_RS09350	0.13	-0.6
2,074,205	+		RALBFv3_RS09350	0.13	+0.7
2,074,206	-		RALBFv3_RS09350	0.13	+0.4
2,074,206	-		RALBFv3_RS09350	0.13	+0.1
2,074,238	+		RALBFv3_RS09350	0.16	-0.6
2,074,238	+		RALBFv3_RS09350	0.16	-0.1
2,074,246	+		RALBFv3_RS09350	0.17	-1.2
2,074,262	-		RALBFv3_RS09350	0.19	+0.0
2,074,267	-		RALBFv3_RS09350	0.19	-0.6
2,074,291	-		RALBFv3_RS09350	0.22	-0.1
2,074,291	-		RALBFv3_RS09350	0.22	-1.2
2,074,291	-		RALBFv3_RS09350	0.22	-0.1
2,074,298	-		RALBFv3_RS09350	0.22	-0.1
2,074,363	+		RALBFv3_RS09350	0.29	-0.1
2,074,366	+		RALBFv3_RS09350	0.29	+0.2
2,074,402	+		RALBFv3_RS09350	0.32	+0.3
2,074,500	-		RALBFv3_RS09350	0.42	+0.1
2,074,557	+		RALBFv3_RS09350	0.47	-0.3
2,074,557	+		RALBFv3_RS09350	0.47	+0.9
2,074,646	+		RALBFv3_RS09350	0.56	+0.1
2,074,646	+		RALBFv3_RS09350	0.56	+0.3
2,074,647	-		RALBFv3_RS09350	0.56	-0.0
2,074,706	+		RALBFv3_RS09350	0.62	+0.1
2,074,706	+		RALBFv3_RS09350	0.62	-0.1
2,074,706	+		RALBFv3_RS09350	0.62	+0.8
2,074,707	-		RALBFv3_RS09350	0.62	-0.1
2,074,709	+		RALBFv3_RS09350	0.62	-0.1
2,074,731	-		RALBFv3_RS09350	0.64	+0.7
2,074,731	-		RALBFv3_RS09350	0.64	-0.0
2,074,755	-		RALBFv3_RS09350	0.67	-0.1
2,074,769	+		RALBFv3_RS09350	0.68	+1.6
2,074,769	+		RALBFv3_RS09350	0.68	-1.2
2,074,769	+		RALBFv3_RS09350	0.68	+0.2
2,074,770	-		RALBFv3_RS09350	0.68	-0.2
2,074,770	-		RALBFv3_RS09350	0.68	+0.2
2,074,859	+		RALBFv3_RS09350	0.77	-0.2
2,074,860	-		RALBFv3_RS09350	0.77	+0.2
2,074,899	+		RALBFv3_RS09350	0.81	+0.0
2,074,918	+		RALBFv3_RS09350	0.83	+0.0
2,074,982	+		RALBFv3_RS09350	0.89	+0.5
2,074,982	+		RALBFv3_RS09350	0.89	-0.2
2,074,996	+				+0.9
2,074,997	-				-0.1
2,075,000	+				+0.2
2,075,014	+				+1.0
2,075,014	+				-0.0
2,075,015	-				+0.0
2,075,023	+				+0.3
2,075,025	-				-1.0
2,075,050	+				+0.2
2,075,095	+				+0.2
2,075,096	-				+1.1
2,075,096	-				-0.4
2,075,096	-				+0.7
2,075,096	-				+0.7
2,075,096	-				+0.8