Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1 dpi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS03900 and RALBFv3_RS23660 overlap by 1 nucleotides RALBFv3_RS23660 and RALBFv3_RS23665 are separated by 106 nucleotides RALBFv3_RS23665 and RALBFv3_RS03905 are separated by 13 nucleotides
RALBFv3_RS03900: RALBFv3_RS03900 - amino acid ABC transporter ATP-binding protein, at 858,654 to 859,397
_RS03900
RALBFv3_RS23660: RALBFv3_RS23660 - hypothetical protein, at 859,397 to 859,648
_RS23660
RALBFv3_RS23665: RALBFv3_RS23665 - hypothetical protein, at 859,755 to 859,986
_RS23665
RALBFv3_RS03905: RALBFv3_RS03905 - amino acid ABC transporter substrate-binding protein, at 860,000 to 860,926
_RS03905
Position (kb) 859
860 Strain fitness (log2 ratio) -2
-1
0
1
2 at 858.755 kb on - strand, within RALBFv3_RS03900 at 858.755 kb on - strand, within RALBFv3_RS03900 at 858.755 kb on - strand, within RALBFv3_RS03900 at 859.510 kb on - strand, within RALBFv3_RS23660 at 859.756 kb on + strand at 859.757 kb on - strand at 859.757 kb on - strand at 859.757 kb on - strand at 859.921 kb on + strand, within RALBFv3_RS23665 at 860.031 kb on + strand at 860.031 kb on + strand at 860.032 kb on - strand at 860.032 kb on - strand at 860.032 kb on - strand at 860.032 kb on - strand at 860.061 kb on + strand at 860.112 kb on + strand, within RALBFv3_RS03905 at 860.209 kb on - strand, within RALBFv3_RS03905 at 860.209 kb on - strand, within RALBFv3_RS03905 at 860.518 kb on - strand, within RALBFv3_RS03905 at 860.722 kb on - strand, within RALBFv3_RS03905 at 860.821 kb on + strand, within RALBFv3_RS03905 at 860.821 kb on + strand, within RALBFv3_RS03905
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1 dpi remove 858,755 - RALBFv3_RS03900 0.14 +0.1 858,755 - RALBFv3_RS03900 0.14 -0.1 858,755 - RALBFv3_RS03900 0.14 -0.5 859,510 - RALBFv3_RS23660 0.45 +0.2 859,756 + -0.3 859,757 - -0.3 859,757 - +0.3 859,757 - +0.3 859,921 + RALBFv3_RS23665 0.72 -0.3 860,031 + +2.0 860,031 + -0.1 860,032 - -0.8 860,032 - -1.0 860,032 - -0.5 860,032 - +1.5 860,061 + +0.0 860,112 + RALBFv3_RS03905 0.12 +1.6 860,209 - RALBFv3_RS03905 0.23 -0.0 860,209 - RALBFv3_RS03905 0.23 +0.0 860,518 - RALBFv3_RS03905 0.56 -1.8 860,722 - RALBFv3_RS03905 0.78 +0.1 860,821 + RALBFv3_RS03905 0.89 +1.1 860,821 + RALBFv3_RS03905 0.89 +0.1
Or see this region's nucleotide sequence