Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1 dpi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS05065 and RALBFv3_RS05070 are separated by 24 nucleotides RALBFv3_RS05070 and RALBFv3_RS05075 are separated by 16 nucleotides
RALBFv3_RS05065: RALBFv3_RS05065 - MotA/TolQ/ExbB proton channel family protein, at 1,128,434 to 1,129,054
_RS05065
RALBFv3_RS05070: RALBFv3_RS05070 - biopolymer transporter ExbD, at 1,129,079 to 1,129,510
_RS05070
RALBFv3_RS05075: RALBFv3_RS05075 - tetraacyldisaccharide 4'-kinase, at 1,129,527 to 1,130,576
_RS05075
Position (kb) 1129
1130 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1128.160 kb on + strand at 1128.160 kb on + strand at 1128.160 kb on + strand at 1128.317 kb on + strand at 1128.317 kb on + strand at 1128.413 kb on + strand at 1128.561 kb on + strand, within RALBFv3_RS05065 at 1128.561 kb on + strand, within RALBFv3_RS05065 at 1128.561 kb on + strand, within RALBFv3_RS05065 at 1128.561 kb on + strand, within RALBFv3_RS05065 at 1128.561 kb on + strand, within RALBFv3_RS05065 at 1128.563 kb on + strand, within RALBFv3_RS05065 at 1128.563 kb on + strand, within RALBFv3_RS05065 at 1128.619 kb on + strand, within RALBFv3_RS05065 at 1128.619 kb on + strand, within RALBFv3_RS05065 at 1128.892 kb on + strand, within RALBFv3_RS05065 at 1128.892 kb on + strand, within RALBFv3_RS05065 at 1128.908 kb on + strand, within RALBFv3_RS05065 at 1128.908 kb on + strand, within RALBFv3_RS05065 at 1128.962 kb on + strand, within RALBFv3_RS05065 at 1128.962 kb on + strand, within RALBFv3_RS05065 at 1128.986 kb on + strand, within RALBFv3_RS05065 at 1128.986 kb on + strand, within RALBFv3_RS05065 at 1128.986 kb on + strand, within RALBFv3_RS05065 at 1128.986 kb on + strand, within RALBFv3_RS05065 at 1128.986 kb on + strand, within RALBFv3_RS05065 at 1128.986 kb on + strand, within RALBFv3_RS05065 at 1129.019 kb on + strand at 1129.184 kb on + strand, within RALBFv3_RS05070 at 1129.184 kb on + strand, within RALBFv3_RS05070 at 1129.184 kb on + strand, within RALBFv3_RS05070 at 1129.184 kb on + strand, within RALBFv3_RS05070
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1 dpi remove 1,128,160 + +0.4 1,128,160 + -0.3 1,128,160 + +0.1 1,128,317 + +0.0 1,128,317 + -0.1 1,128,413 + -1.2 1,128,561 + RALBFv3_RS05065 0.20 -0.2 1,128,561 + RALBFv3_RS05065 0.20 -0.4 1,128,561 + RALBFv3_RS05065 0.20 +1.4 1,128,561 + RALBFv3_RS05065 0.20 +0.3 1,128,561 + RALBFv3_RS05065 0.20 +0.1 1,128,563 + RALBFv3_RS05065 0.21 -0.1 1,128,563 + RALBFv3_RS05065 0.21 +0.2 1,128,619 + RALBFv3_RS05065 0.30 -0.2 1,128,619 + RALBFv3_RS05065 0.30 -0.2 1,128,892 + RALBFv3_RS05065 0.74 -0.0 1,128,892 + RALBFv3_RS05065 0.74 +0.5 1,128,908 + RALBFv3_RS05065 0.76 -1.6 1,128,908 + RALBFv3_RS05065 0.76 +0.3 1,128,962 + RALBFv3_RS05065 0.85 -0.3 1,128,962 + RALBFv3_RS05065 0.85 -0.9 1,128,986 + RALBFv3_RS05065 0.89 +0.0 1,128,986 + RALBFv3_RS05065 0.89 +0.6 1,128,986 + RALBFv3_RS05065 0.89 +0.5 1,128,986 + RALBFv3_RS05065 0.89 -0.5 1,128,986 + RALBFv3_RS05065 0.89 +1.8 1,128,986 + RALBFv3_RS05065 0.89 +0.3 1,129,019 + -1.9 1,129,184 + RALBFv3_RS05070 0.24 +0.2 1,129,184 + RALBFv3_RS05070 0.24 -0.3 1,129,184 + RALBFv3_RS05070 0.24 +0.1 1,129,184 + RALBFv3_RS05070 0.24 -0.1
Or see this region's nucleotide sequence