Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1 dpi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS02470 and RALBFv3_RS02475 are separated by 491 nucleotides RALBFv3_RS02475 and RALBFv3_RS02480 overlap by 17 nucleotides RALBFv3_RS02480 and RALBFv3_RS02485 are separated by 130 nucleotides
RALBFv3_RS02470: RALBFv3_RS02470 - dicarboxylate/amino acid:cation symporter, at 553,150 to 554,445
_RS02470
RALBFv3_RS02475: RALBFv3_RS02475 - activator of HSP90 ATPase, at 554,937 to 555,887
_RS02475
RALBFv3_RS02480: RALBFv3_RS02480 - transcriptional regulator, at 555,871 to 556,227
_RS02480
RALBFv3_RS02485: RALBFv3_RS02485 - ATP-binding protein, at 556,358 to 558,673
_RS02485
Position (kb) 554
555
556 Strain fitness (log2 ratio) -1
0
1 at 554.251 kb on + strand, within RALBFv3_RS02470 at 554.456 kb on - strand at 554.636 kb on + strand at 554.934 kb on + strand at 554.935 kb on - strand at 555.167 kb on - strand, within RALBFv3_RS02475 at 555.347 kb on - strand, within RALBFv3_RS02475 at 555.506 kb on - strand, within RALBFv3_RS02475 at 555.506 kb on - strand, within RALBFv3_RS02475 at 555.664 kb on + strand, within RALBFv3_RS02475 at 555.921 kb on - strand, within RALBFv3_RS02480 at 556.239 kb on + strand at 556.240 kb on - strand at 556.256 kb on + strand at 556.257 kb on - strand at 556.752 kb on + strand, within RALBFv3_RS02485 at 556.752 kb on + strand, within RALBFv3_RS02485 at 556.875 kb on + strand, within RALBFv3_RS02485 at 556.875 kb on + strand, within RALBFv3_RS02485 at 556.875 kb on + strand, within RALBFv3_RS02485 at 556.875 kb on + strand, within RALBFv3_RS02485 at 556.875 kb on + strand, within RALBFv3_RS02485
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1 dpi remove 554,251 + RALBFv3_RS02470 0.85 +0.7 554,456 - -1.6 554,636 + -1.5 554,934 + +0.6 554,935 - +0.3 555,167 - RALBFv3_RS02475 0.24 -0.3 555,347 - RALBFv3_RS02475 0.43 +0.1 555,506 - RALBFv3_RS02475 0.60 -0.8 555,506 - RALBFv3_RS02475 0.60 -0.5 555,664 + RALBFv3_RS02475 0.76 -1.4 555,921 - RALBFv3_RS02480 0.14 -0.3 556,239 + -1.1 556,240 - -0.2 556,256 + -0.5 556,257 - -0.1 556,752 + RALBFv3_RS02485 0.17 +1.2 556,752 + RALBFv3_RS02485 0.17 -0.6 556,875 + RALBFv3_RS02485 0.22 -0.3 556,875 + RALBFv3_RS02485 0.22 +0.3 556,875 + RALBFv3_RS02485 0.22 -0.2 556,875 + RALBFv3_RS02485 0.22 -0.1 556,875 + RALBFv3_RS02485 0.22 +0.3
Or see this region's nucleotide sequence