Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS01240

Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1 dpi

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS01235 and RALBFv3_RS01240 are separated by 85 nucleotidesRALBFv3_RS01240 and RALBFv3_RS01245 are separated by 98 nucleotides RALBFv3_RS01235: RALBFv3_RS01235 - ABC transporter ATP-binding protein, at 275,933 to 277,024 _RS01235 RALBFv3_RS01240: RALBFv3_RS01240 - ABC transporter substrate-binding protein, at 277,110 to 278,162 _RS01240 RALBFv3_RS01245: RALBFv3_RS01245 - ABC transporter permease, at 278,261 to 279,529 _RS01245 Position (kb) 277 278 279Strain fitness (log2 ratio) -1 0 1at 277.734 kb on + strand, within RALBFv3_RS01240at 277.879 kb on - strand, within RALBFv3_RS01240at 277.879 kb on - strand, within RALBFv3_RS01240at 277.938 kb on + strand, within RALBFv3_RS01240at 277.939 kb on - strand, within RALBFv3_RS01240at 278.161 kb on - strandat 278.161 kb on - strandat 278.519 kb on + strand, within RALBFv3_RS01245at 278.787 kb on - strand, within RALBFv3_RS01245at 278.787 kb on - strand, within RALBFv3_RS01245

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1 dpi
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277,734 + RALBFv3_RS01240 0.59 +0.8
277,879 - RALBFv3_RS01240 0.73 -0.3
277,879 - RALBFv3_RS01240 0.73 +1.3
277,938 + RALBFv3_RS01240 0.79 +0.2
277,939 - RALBFv3_RS01240 0.79 +0.6
278,161 - -0.3
278,161 - +0.6
278,519 + RALBFv3_RS01245 0.20 -0.7
278,787 - RALBFv3_RS01245 0.41 -0.8
278,787 - RALBFv3_RS01245 0.41 -0.0

Or see this region's nucleotide sequence