Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS28865

Experiment: Growth at pH9 and (C) D-Glucose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Growth at pH9 and (C) D-Glucose
6,419,683	-		PFLU_RS28860	0.69	-0.2
6,419,736	+		PFLU_RS28860	0.73	-0.1
6,419,736	+		PFLU_RS28860	0.73	+0.4
6,419,797	+		PFLU_RS28860	0.79	-0.5
6,419,797	+		PFLU_RS28860	0.79	-1.3
6,419,797	+		PFLU_RS28860	0.79	+1.3
6,419,797	+		PFLU_RS28860	0.79	+0.4
6,419,798	-		PFLU_RS28860	0.79	-0.4
6,419,798	-		PFLU_RS28860	0.79	+2.1
6,419,798	-		PFLU_RS28860	0.79	-1.4
6,419,798	-		PFLU_RS28860	0.79	-0.9
6,419,798	-		PFLU_RS28860	0.79	+2.1
6,419,814	-		PFLU_RS28860	0.80	-0.5
6,420,075	+				-1.0
6,420,075	+				+0.2
6,420,075	+				-0.2
6,420,075	+				-1.5
6,420,075	+				-1.3
6,420,075	+				-2.1
6,420,075	+				-2.6
6,420,075	+				+2.0
6,420,075	+				+1.0
6,420,076	-				+0.5
6,420,076	-				-1.1
6,420,076	-				+2.4
6,420,076	-				-2.5
6,420,076	-				+0.5
6,420,077	+				+0.5
6,420,077	+				+0.3
6,420,077	+				+1.7
6,420,077	+				+0.1
6,420,077	+				-1.2
6,420,077	+				+0.7
6,420,077	+				-1.2
6,420,077	+				-0.5
6,420,077	+				-0.8
6,420,077	+				-1.7
6,420,077	+				-1.7
6,420,077	+				+0.0
6,420,077	+				+0.4
6,420,077	+				+1.8
6,420,077	+				-1.5
6,420,077	+				-1.3
6,420,077	+				-3.0
6,420,077	+				+0.1
6,420,077	+				-0.2
6,420,077	+				-0.2
6,420,078	-				-0.5
6,420,078	-				-0.0
6,420,078	-				+1.0
6,420,078	-				+0.5
6,420,078	-				+2.1
6,420,078	-				-0.5
6,420,078	-				+0.4
6,420,078	-				+0.7
6,420,078	-				-2.1
6,420,078	-				+0.7
6,420,078	-				-0.3
6,420,078	-				+1.6
6,420,078	-				+0.1
6,420,078	-				-1.1
6,420,099	+				+0.6
6,420,099	+				-2.6
6,420,100	-				-1.7
6,420,100	-				+0.2
6,420,100	-				+0.1
6,420,100	-				-0.7
6,420,100	-				-0.1
6,420,100	-				+0.6
6,420,134	+				+2.2
6,420,134	+				+1.9
6,420,134	+				+0.0
6,420,134	+				+0.9
6,420,134	+				+1.5
6,420,135	-				+0.8
6,420,135	-				-1.3
6,420,135	-				-1.5
6,420,135	-				+0.2
6,420,135	-				-1.2
6,420,135	-				+0.5
6,420,255	+				+2.7
6,420,255	+				+1.8
6,420,255	+				+1.9
6,420,255	+				+2.2
6,420,256	-				+2.1
6,420,256	-				+0.6
6,420,323	+				+2.5
6,420,323	+				+1.8
6,420,323	+				-1.1
6,420,323	+				-0.0
6,420,324	-				+2.3
6,420,324	-				+1.1
6,420,324	-				+2.5
6,420,324	-				+1.3
6,420,324	-				+0.2
6,420,448	+		PFLU_RS28865	0.18	-1.0
6,420,448	+		PFLU_RS28865	0.18	+1.1
6,420,448	+		PFLU_RS28865	0.18	-2.3
6,420,448	+		PFLU_RS28865	0.18	-0.0
6,420,449	-		PFLU_RS28865	0.18	-2.0
6,420,455	+		PFLU_RS28865	0.19	+1.3
6,420,455	+		PFLU_RS28865	0.19	-1.1
6,420,455	+		PFLU_RS28865	0.19	+1.5
6,420,455	+		PFLU_RS28865	0.19	+1.3
6,420,456	-		PFLU_RS28865	0.19	-1.8
6,420,456	-		PFLU_RS28865	0.19	+0.3
6,420,456	-		PFLU_RS28865	0.19	+1.5
6,420,456	-		PFLU_RS28865	0.19	+2.1
6,420,456	-		PFLU_RS28865	0.19	-1.2
6,420,456	-		PFLU_RS28865	0.19	-0.1
6,420,456	-		PFLU_RS28865	0.19	-1.3
6,420,809	+		PFLU_RS28865	0.45	-2.2
6,420,809	+		PFLU_RS28865	0.45	-1.8
6,420,810	-		PFLU_RS28865	0.45	-0.1
6,420,810	-		PFLU_RS28865	0.45	-0.1
6,420,824	+		PFLU_RS28865	0.46	+4.1
6,420,824	+		PFLU_RS28865	0.46	+3.0
6,420,824	+		PFLU_RS28865	0.46	+0.9
6,420,824	+		PFLU_RS28865	0.46	-0.2
6,420,824	+		PFLU_RS28865	0.46	+2.0
6,420,824	+		PFLU_RS28865	0.46	-0.4
6,420,824	+		PFLU_RS28865	0.46	+3.3
6,420,825	-		PFLU_RS28865	0.46	+0.4
6,420,825	-		PFLU_RS28865	0.46	-2.4
6,420,825	-		PFLU_RS28865	0.46	+1.1
6,420,825	-		PFLU_RS28865	0.46	+0.9
6,420,825	-		PFLU_RS28865	0.46	-1.5
6,420,825	-		PFLU_RS28865	0.46	+1.9
6,420,825	-		PFLU_RS28865	0.46	+0.6
6,420,935	+		PFLU_RS28865	0.54	+2.3
6,420,936	-		PFLU_RS28865	0.54	+1.5
6,420,944	-		PFLU_RS28865	0.54	+1.6
6,420,944	-		PFLU_RS28865	0.54	+2.2
6,421,239	+		PFLU_RS28865	0.76	+1.9
6,421,239	+		PFLU_RS28865	0.76	-2.1
6,421,239	+		PFLU_RS28865	0.76	+2.8
6,421,240	-		PFLU_RS28865	0.76	-0.3
6,421,240	-		PFLU_RS28865	0.76	-0.3
6,421,417	+		PFLU_RS28865	0.89	+1.7
6,421,417	+		PFLU_RS28865	0.89	+1.0
6,421,417	+		PFLU_RS28865	0.89	+0.0
6,421,417	+		PFLU_RS28865	0.89	-0.8
6,421,439	+				+1.7
6,421,440	-				-0.1
6,421,529	+				+0.3
6,421,529	+				+0.3
6,421,529	+				+4.0
6,421,529	+				+2.2
6,421,529	+				-1.2
6,421,530	-				+0.4
6,421,530	-				+3.1
6,421,530	-				+2.1
6,421,530	-				-0.8
6,421,565	+				+2.1
6,421,565	+				+1.5
6,421,565	+				+1.1
6,421,565	+				-0.6
6,421,565	+				-1.4
6,421,566	-				-2.3
6,421,566	-				-2.4
6,421,566	-				+1.4
6,421,566	-				-1.8
6,421,566	-				-0.3
6,421,712	+		PFLU_RS28870	0.13	+2.1
6,421,712	+		PFLU_RS28870	0.13	+0.3
6,421,713	-		PFLU_RS28870	0.13	-1.0
6,421,713	-		PFLU_RS28870	0.13	+2.2
6,421,713	-		PFLU_RS28870	0.13	+4.7
6,421,713	-		PFLU_RS28870	0.13	+1.4
6,421,713	-		PFLU_RS28870	0.13	+5.3
6,421,713	-		PFLU_RS28870	0.13	+1.1
6,421,713	-		PFLU_RS28870	0.13	-1.1
6,421,765	+		PFLU_RS28870	0.24	+1.1
6,421,765	+		PFLU_RS28870	0.24	-0.8
6,421,765	+		PFLU_RS28870	0.24	-0.3
6,421,765	+		PFLU_RS28870	0.24	-1.8
6,421,765	+		PFLU_RS28870	0.24	+1.5
6,421,765	+		PFLU_RS28870	0.24	+0.3
6,421,765	+		PFLU_RS28870	0.24	+3.1
6,421,765	+		PFLU_RS28870	0.24	-0.8
6,421,765	+		PFLU_RS28870	0.24	+0.7
6,421,766	-		PFLU_RS28870	0.24	+0.5
6,421,766	-		PFLU_RS28870	0.24	+2.5
6,421,766	-		PFLU_RS28870	0.24	+0.6
6,421,766	-		PFLU_RS28870	0.24	+1.1
6,421,766	-		PFLU_RS28870	0.24	-2.3
6,421,766	-		PFLU_RS28870	0.24	-0.3
6,421,766	-		PFLU_RS28870	0.24	-1.6
6,421,790	+		PFLU_RS28870	0.29	-1.9
6,421,790	+		PFLU_RS28870	0.29	-1.9
6,421,790	+		PFLU_RS28870	0.29	-0.1
6,421,791	-		PFLU_RS28870	0.29	-0.8
6,421,791	-		PFLU_RS28870	0.29	-0.5
6,421,825	+		PFLU_RS28870	0.37	+1.5
6,421,825	+		PFLU_RS28870	0.37	-0.3
6,421,825	+		PFLU_RS28870	0.37	+0.5
6,421,825	+		PFLU_RS28870	0.37	+2.4
6,421,825	+		PFLU_RS28870	0.37	-0.2
6,421,825	+		PFLU_RS28870	0.37	-1.4
6,421,825	+		PFLU_RS28870	0.37	-0.8
6,421,825	+		PFLU_RS28870	0.37	+1.2
6,421,825	+		PFLU_RS28870	0.37	-1.9
6,421,825	+		PFLU_RS28870	0.37	+1.1
6,421,825	+		PFLU_RS28870	0.37	+1.2
6,421,825	+		PFLU_RS28870	0.37	+0.8
6,421,825	+		PFLU_RS28870	0.37	+0.5
6,421,825	+		PFLU_RS28870	0.37	+1.0
6,421,825	+		PFLU_RS28870	0.37	+2.2
6,421,825	+		PFLU_RS28870	0.37	-0.1
6,421,825	+		PFLU_RS28870	0.37	-1.0
6,421,825	+		PFLU_RS28870	0.37	-0.5
6,421,825	+		PFLU_RS28870	0.37	+1.1
6,421,825	+		PFLU_RS28870	0.37	-1.8
6,421,825	+		PFLU_RS28870	0.37	+3.5
6,421,825	+		PFLU_RS28870	0.37	-0.4
6,421,825	+		PFLU_RS28870	0.37	+1.1
6,421,825	+		PFLU_RS28870	0.37	+0.7
6,421,825	+		PFLU_RS28870	0.37	+1.3
6,421,825	+		PFLU_RS28870	0.37	+1.0
6,421,825	+		PFLU_RS28870	0.37	+3.2
6,421,825	+		PFLU_RS28870	0.37	+0.6
6,421,826	-		PFLU_RS28870	0.37	-0.5
6,421,826	-		PFLU_RS28870	0.37	-0.3
6,421,826	-		PFLU_RS28870	0.37	+0.2
6,421,826	-		PFLU_RS28870	0.37	+1.6
6,421,826	-		PFLU_RS28870	0.37	+0.8
6,421,826	-		PFLU_RS28870	0.37	-0.5
6,421,826	-		PFLU_RS28870	0.37	+1.7
6,421,826	-		PFLU_RS28870	0.37	-2.7
6,421,826	-		PFLU_RS28870	0.37	+1.6
6,421,826	-		PFLU_RS28870	0.37	+1.6
6,421,826	-		PFLU_RS28870	0.37	-1.2
6,421,826	-		PFLU_RS28870	0.37	+2.0
6,421,826	-		PFLU_RS28870	0.37	-0.1
6,421,826	-		PFLU_RS28870	0.37	+0.8
6,421,826	-		PFLU_RS28870	0.37	-0.8
6,421,826	-		PFLU_RS28870	0.37	+1.7
6,421,826	-		PFLU_RS28870	0.37	+0.3
6,421,826	-		PFLU_RS28870	0.37	-1.5
6,421,826	-		PFLU_RS28870	0.37	+0.2
6,421,826	-		PFLU_RS28870	0.37	+0.8
6,421,826	-		PFLU_RS28870	0.37	+3.1
6,421,826	-		PFLU_RS28870	0.37	-2.5
6,421,826	-		PFLU_RS28870	0.37	+0.9
6,421,826	-		PFLU_RS28870	0.37	+3.0
6,421,826	-		PFLU_RS28870	0.37	+1.6
6,421,826	-		PFLU_RS28870	0.37	+0.9
6,421,826	-		PFLU_RS28870	0.37	+2.0
6,421,826	-		PFLU_RS28870	0.37	+1.4
6,422,091	-				-0.5
6,422,123	+				+1.2
6,422,124	-				-2.2
6,422,125	+				+1.5
6,422,126	-				-0.9
6,422,130	-				-1.7
6,422,136	+				-0.1
6,422,136	+				-1.9
6,422,145	+				-1.4
6,422,156	-				+1.3
6,422,190	+				-1.6
6,422,190	+				-1.7
6,422,190	+				-2.8
6,422,190	+				+0.1
6,422,190	+				+0.8
6,422,190	+				-0.3
6,422,190	+				-0.7
6,422,190	+				-1.1
6,422,190	+				+3.0
6,422,191	-				-1.1
6,422,191	-				+1.6
6,422,191	-				+2.3
6,422,279	+				+0.2
6,422,330	-		PFLU_RS28875	0.23	+0.7
6,422,330	-		PFLU_RS28875	0.23	-0.0
6,422,380	+		PFLU_RS28875	0.38	-0.4
6,422,380	+		PFLU_RS28875	0.38	-1.7
6,422,380	+		PFLU_RS28875	0.38	+1.4
6,422,380	+		PFLU_RS28875	0.38	+2.1
6,422,380	+		PFLU_RS28875	0.38	+2.2
6,422,380	+		PFLU_RS28875	0.38	-0.2
6,422,380	+		PFLU_RS28875	0.38	+3.4
6,422,381	-		PFLU_RS28875	0.38	-0.7
6,422,381	-		PFLU_RS28875	0.38	-0.7
6,422,381	-		PFLU_RS28875	0.38	+3.1
6,422,381	-		PFLU_RS28875	0.38	-1.3
6,422,381	-		PFLU_RS28875	0.38	-1.5
6,422,381	-		PFLU_RS28875	0.38	+1.2
6,422,381	-		PFLU_RS28875	0.38	-2.3
6,422,381	-		PFLU_RS28875	0.38	-1.8
6,422,381	-		PFLU_RS28875	0.38	-1.8
6,422,442	+		PFLU_RS28875	0.56	-0.8
6,422,442	+		PFLU_RS28875	0.56	+2.0
6,422,442	+		PFLU_RS28875	0.56	-1.2
6,422,442	+		PFLU_RS28875	0.56	-0.1
6,422,442	+		PFLU_RS28875	0.56	+0.3
6,422,442	+		PFLU_RS28875	0.56	-0.7
6,422,443	-		PFLU_RS28875	0.57	+1.2
6,422,443	-		PFLU_RS28875	0.57	-1.8
6,422,443	-		PFLU_RS28875	0.57	+0.3
6,422,443	-		PFLU_RS28875	0.57	-2.6
6,422,443	-		PFLU_RS28875	0.57	+1.6
6,422,443	-		PFLU_RS28875	0.57	+1.2
6,422,443	-		PFLU_RS28875	0.57	+2.7
6,422,443	-		PFLU_RS28875	0.57	-0.7
6,422,443	-		PFLU_RS28875	0.57	+1.2
6,422,443	-		PFLU_RS28875	0.57	+3.8