Experiment: Growth at pH9 and (C) D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS19590 and PFLU_RS19595 are separated by 287 nucleotides PFLU_RS19595 and PFLU_RS19600 overlap by 4 nucleotides PFLU_RS19600 and PFLU_RS19605 are separated by 131 nucleotides
PFLU_RS19590: PFLU_RS19590 - pyridoxamine 5'-phosphate oxidase, at 4,437,973 to 4,438,905
_RS19590
PFLU_RS19595: PFLU_RS19595 - iron export ABC transporter permease subunit FetB, at 4,439,193 to 4,439,984
_RS19595
PFLU_RS19600: PFLU_RS19600 - ATP-binding cassette domain-containing protein, at 4,439,981 to 4,440,658
_RS19600
PFLU_RS19605: PFLU_RS19605 - aldo/keto reductase, at 4,440,790 to 4,441,866
_RS19605
Position (kb) 4439
4440 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4438.343 kb on + strand, within PFLU_RS19590 at 4438.343 kb on + strand, within PFLU_RS19590 at 4438.344 kb on - strand, within PFLU_RS19590 at 4438.459 kb on + strand, within PFLU_RS19590 at 4438.470 kb on - strand, within PFLU_RS19590 at 4438.470 kb on - strand, within PFLU_RS19590 at 4438.470 kb on - strand, within PFLU_RS19590 at 4438.470 kb on - strand, within PFLU_RS19590 at 4438.754 kb on + strand, within PFLU_RS19590 at 4438.912 kb on + strand at 4438.912 kb on + strand at 4438.913 kb on - strand at 4438.913 kb on - strand at 4438.971 kb on + strand at 4438.972 kb on - strand at 4438.986 kb on + strand at 4438.986 kb on + strand at 4438.986 kb on + strand at 4438.986 kb on + strand at 4438.986 kb on + strand at 4438.986 kb on + strand at 4438.987 kb on - strand at 4438.987 kb on - strand at 4438.987 kb on - strand at 4438.987 kb on - strand at 4438.997 kb on + strand at 4438.997 kb on + strand at 4438.997 kb on + strand at 4438.997 kb on + strand at 4438.998 kb on - strand at 4438.998 kb on - strand at 4438.998 kb on - strand at 4438.998 kb on - strand at 4438.998 kb on - strand at 4439.002 kb on + strand at 4439.002 kb on + strand at 4439.002 kb on + strand at 4439.251 kb on + strand at 4439.251 kb on + strand at 4439.598 kb on - strand, within PFLU_RS19595 at 4439.621 kb on - strand, within PFLU_RS19595 at 4439.621 kb on - strand, within PFLU_RS19595 at 4439.720 kb on - strand, within PFLU_RS19595 at 4439.794 kb on + strand, within PFLU_RS19595 at 4439.794 kb on + strand, within PFLU_RS19595 at 4439.794 kb on + strand, within PFLU_RS19595 at 4439.794 kb on + strand, within PFLU_RS19595 at 4439.795 kb on - strand, within PFLU_RS19595 at 4439.795 kb on - strand, within PFLU_RS19595 at 4439.801 kb on - strand, within PFLU_RS19595 at 4439.901 kb on + strand, within PFLU_RS19595 at 4439.902 kb on - strand, within PFLU_RS19595 at 4439.902 kb on - strand, within PFLU_RS19595 at 4439.902 kb on - strand, within PFLU_RS19595 at 4440.005 kb on + strand at 4440.005 kb on + strand at 4440.005 kb on + strand at 4440.006 kb on - strand at 4440.076 kb on + strand, within PFLU_RS19600 at 4440.076 kb on + strand, within PFLU_RS19600 at 4440.340 kb on + strand, within PFLU_RS19600 at 4440.341 kb on - strand, within PFLU_RS19600 at 4440.341 kb on - strand, within PFLU_RS19600 at 4440.341 kb on - strand, within PFLU_RS19600 at 4440.341 kb on - strand, within PFLU_RS19600 at 4440.408 kb on + strand, within PFLU_RS19600 at 4440.408 kb on + strand, within PFLU_RS19600 at 4440.408 kb on + strand, within PFLU_RS19600 at 4440.409 kb on - strand, within PFLU_RS19600 at 4440.409 kb on - strand, within PFLU_RS19600 at 4440.416 kb on - strand, within PFLU_RS19600 at 4440.736 kb on + strand at 4440.736 kb on + strand at 4440.736 kb on + strand at 4440.737 kb on - strand at 4440.775 kb on + strand at 4440.775 kb on + strand at 4440.775 kb on + strand at 4440.776 kb on - strand at 4440.776 kb on - strand at 4440.776 kb on - strand at 4440.776 kb on - strand at 4440.779 kb on + strand at 4440.780 kb on - strand at 4440.971 kb on - strand, within PFLU_RS19605
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH9 and (C) D-Glucose remove 4,438,343 + PFLU_RS19590 0.40 -1.6 4,438,343 + PFLU_RS19590 0.40 +1.7 4,438,344 - PFLU_RS19590 0.40 +0.0 4,438,459 + PFLU_RS19590 0.52 +0.8 4,438,470 - PFLU_RS19590 0.53 +0.1 4,438,470 - PFLU_RS19590 0.53 -2.5 4,438,470 - PFLU_RS19590 0.53 +1.5 4,438,470 - PFLU_RS19590 0.53 -0.3 4,438,754 + PFLU_RS19590 0.84 +0.5 4,438,912 + +0.0 4,438,912 + -1.2 4,438,913 - +0.6 4,438,913 - -1.9 4,438,971 + -0.7 4,438,972 - +1.2 4,438,986 + -0.5 4,438,986 + +0.8 4,438,986 + -2.7 4,438,986 + -2.3 4,438,986 + -1.0 4,438,986 + +1.3 4,438,987 - +2.0 4,438,987 - -2.1 4,438,987 - +0.8 4,438,987 - +1.5 4,438,997 + +2.6 4,438,997 + -1.0 4,438,997 + +0.9 4,438,997 + -2.3 4,438,998 - +1.9 4,438,998 - +1.7 4,438,998 - +0.7 4,438,998 - +1.3 4,438,998 - +1.0 4,439,002 + -1.7 4,439,002 + -1.0 4,439,002 + +1.4 4,439,251 + +0.3 4,439,251 + -1.6 4,439,598 - PFLU_RS19595 0.51 -2.2 4,439,621 - PFLU_RS19595 0.54 +1.9 4,439,621 - PFLU_RS19595 0.54 -0.5 4,439,720 - PFLU_RS19595 0.67 +3.6 4,439,794 + PFLU_RS19595 0.76 -2.7 4,439,794 + PFLU_RS19595 0.76 +0.9 4,439,794 + PFLU_RS19595 0.76 -1.6 4,439,794 + PFLU_RS19595 0.76 +0.9 4,439,795 - PFLU_RS19595 0.76 +3.3 4,439,795 - PFLU_RS19595 0.76 +1.5 4,439,801 - PFLU_RS19595 0.77 +3.3 4,439,901 + PFLU_RS19595 0.89 +4.1 4,439,902 - PFLU_RS19595 0.90 +2.1 4,439,902 - PFLU_RS19595 0.90 +0.6 4,439,902 - PFLU_RS19595 0.90 +0.9 4,440,005 + -1.0 4,440,005 + +0.0 4,440,005 + -0.1 4,440,006 - -1.2 4,440,076 + PFLU_RS19600 0.14 +0.6 4,440,076 + PFLU_RS19600 0.14 +1.9 4,440,340 + PFLU_RS19600 0.53 -0.9 4,440,341 - PFLU_RS19600 0.53 +1.4 4,440,341 - PFLU_RS19600 0.53 +1.6 4,440,341 - PFLU_RS19600 0.53 +2.0 4,440,341 - PFLU_RS19600 0.53 +0.8 4,440,408 + PFLU_RS19600 0.63 +2.1 4,440,408 + PFLU_RS19600 0.63 +3.7 4,440,408 + PFLU_RS19600 0.63 +1.9 4,440,409 - PFLU_RS19600 0.63 -1.0 4,440,409 - PFLU_RS19600 0.63 +2.6 4,440,416 - PFLU_RS19600 0.64 +0.0 4,440,736 + +1.0 4,440,736 + -1.6 4,440,736 + -2.2 4,440,737 - +1.0 4,440,775 + -0.7 4,440,775 + -0.0 4,440,775 + +0.3 4,440,776 - +0.2 4,440,776 - -0.1 4,440,776 - +0.8 4,440,776 - +0.5 4,440,779 + +2.2 4,440,780 - -2.2 4,440,971 - PFLU_RS19605 0.17 +0.9
Or see this region's nucleotide sequence