Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS14790

Experiment: Growth at pH9 and (C) D-Glucose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Growth at pH9 and (C) D-Glucose
3,307,638	+		PFLU_RS14785	0.47	-0.8
3,307,659	+		PFLU_RS14785	0.48	+0.8
3,307,704	+		PFLU_RS14785	0.53	-1.8
3,307,705	-		PFLU_RS14785	0.53	+1.4
3,307,727	-		PFLU_RS14785	0.55	+3.2
3,307,740	+		PFLU_RS14785	0.56	+1.2
3,307,740	+		PFLU_RS14785	0.56	-0.8
3,307,741	-		PFLU_RS14785	0.56	+1.8
3,307,741	-		PFLU_RS14785	0.56	+2.4
3,307,741	-		PFLU_RS14785	0.56	-1.4
3,307,741	-		PFLU_RS14785	0.56	-0.2
3,307,741	-		PFLU_RS14785	0.56	+0.6
3,307,741	-		PFLU_RS14785	0.56	+4.8
3,307,751	+		PFLU_RS14785	0.57	+0.8
3,307,752	-		PFLU_RS14785	0.57	+0.2
3,307,764	+		PFLU_RS14785	0.58	-2.0
3,307,765	-		PFLU_RS14785	0.58	-0.2
3,307,765	-		PFLU_RS14785	0.58	+0.2
3,307,765	-		PFLU_RS14785	0.58	-2.4
3,307,775	+		PFLU_RS14785	0.59	+1.6
3,307,775	+		PFLU_RS14785	0.59	-1.4
3,307,776	-		PFLU_RS14785	0.59	+0.7
3,307,776	-		PFLU_RS14785	0.59	+0.2
3,307,776	-		PFLU_RS14785	0.59	-1.1
3,307,776	-		PFLU_RS14785	0.59	-0.1
3,307,817	+		PFLU_RS14785	0.63	-3.3
3,307,888	+		PFLU_RS14785	0.69	-0.8
3,307,888	+		PFLU_RS14785	0.69	+1.5
3,307,893	+		PFLU_RS14785	0.70	-0.4
3,307,893	+		PFLU_RS14785	0.70	+2.5
3,307,894	-		PFLU_RS14785	0.70	+0.2
3,307,920	+		PFLU_RS14785	0.72	-1.5
3,307,921	-		PFLU_RS14785	0.72	+0.0
3,308,040	+		PFLU_RS14785	0.83	-1.4
3,308,040	+		PFLU_RS14785	0.83	+0.5
3,308,040	+		PFLU_RS14785	0.83	+1.4
3,308,040	+		PFLU_RS14785	0.83	-1.4
3,308,040	+		PFLU_RS14785	0.83	+1.3
3,308,040	+		PFLU_RS14785	0.83	+1.8
3,308,040	+		PFLU_RS14785	0.83	-0.4
3,308,040	+		PFLU_RS14785	0.83	-1.8
3,308,041	-		PFLU_RS14785	0.83	-0.0
3,308,041	-		PFLU_RS14785	0.83	-0.8
3,308,041	-		PFLU_RS14785	0.83	+1.2
3,308,041	-		PFLU_RS14785	0.83	+1.8
3,308,041	-		PFLU_RS14785	0.83	-1.8
3,308,041	-		PFLU_RS14785	0.83	+2.4
3,308,041	-		PFLU_RS14785	0.83	+1.5
3,308,041	-		PFLU_RS14785	0.83	+0.8
3,308,041	-		PFLU_RS14785	0.83	+1.8
3,308,041	-		PFLU_RS14785	0.83	+3.1
3,308,137	+				-2.8
3,308,138	-				-0.2
3,308,138	-				+0.2
3,308,138	-				+0.0
3,308,186	+				-0.8
3,308,186	+				+2.7
3,308,186	+				+0.4
3,308,186	+				-1.6
3,308,186	+				-1.8
3,308,186	+				+1.1
3,308,186	+				-1.4
3,308,186	+				+1.5
3,308,186	+				-1.7
3,308,186	+				+0.6
3,308,186	+				-2.0
3,308,186	+				-0.0
3,308,186	+				-1.4
3,308,186	+				+0.2
3,308,187	-				-1.9
3,308,187	-				-1.6
3,308,187	-				-2.8
3,308,187	-				+0.2
3,308,187	-				-0.2
3,308,187	-				-0.8
3,308,187	-				-2.1
3,308,187	-				-1.6
3,308,187	-				+1.6
3,308,187	-				-0.9
3,308,187	-				+3.0
3,308,187	-				-0.5
3,308,231	+				+1.5
3,308,232	-				+1.6
3,308,245	+				-1.6
3,308,246	-				-1.2
3,308,248	+				-1.4
3,308,248	+				+0.6
3,308,249	-				+1.4
3,308,255	+				+0.0
3,308,291	+				-0.4
3,308,312	+				-0.6
3,308,312	+				+1.4
3,308,312	+				-1.3
3,308,312	+				+1.5
3,308,346	+				-0.4
3,308,346	+				-1.1
3,308,346	+				+0.9
3,308,347	-				-0.8
3,308,347	-				-0.4
3,308,347	-				-2.2
3,308,347	-				-1.2
3,308,347	-				-1.8
3,308,347	-				+1.8
3,308,401	+				-0.1
3,308,401	+				+2.2
3,308,455	+		PFLU_RS14790	0.12	-0.0
3,308,469	+		PFLU_RS14790	0.14	+2.4
3,308,469	+		PFLU_RS14790	0.14	-1.4
3,308,469	+		PFLU_RS14790	0.14	+1.8
3,308,470	-		PFLU_RS14790	0.14	+0.4
3,308,470	-		PFLU_RS14790	0.14	+1.8
3,308,470	-		PFLU_RS14790	0.14	-0.8
3,308,470	-		PFLU_RS14790	0.14	+2.0
3,308,554	+		PFLU_RS14790	0.26	-0.3
3,308,610	+		PFLU_RS14790	0.34	-2.1
3,308,610	+		PFLU_RS14790	0.34	-1.6
3,308,610	+		PFLU_RS14790	0.34	+0.9
3,308,610	+		PFLU_RS14790	0.34	+2.0
3,308,610	+		PFLU_RS14790	0.34	-0.5
3,308,610	+		PFLU_RS14790	0.34	+2.5
3,308,611	-		PFLU_RS14790	0.34	+0.5
3,308,611	-		PFLU_RS14790	0.34	-0.4
3,308,611	-		PFLU_RS14790	0.34	+1.2
3,308,611	-		PFLU_RS14790	0.34	-0.4
3,308,667	+		PFLU_RS14790	0.42	+0.5
3,308,668	-		PFLU_RS14790	0.42	+2.8
3,308,668	-		PFLU_RS14790	0.42	-1.1
3,308,668	-		PFLU_RS14790	0.42	-1.1
3,308,854	-		PFLU_RS14790	0.68	+0.6
3,308,854	-		PFLU_RS14790	0.68	-0.1
3,308,854	-		PFLU_RS14790	0.68	-3.0
3,308,966	+		PFLU_RS14790	0.84	+0.3
3,309,052	+				-2.8
3,309,052	+				+0.8
3,309,052	+				-0.4
3,309,052	+				+1.2
3,309,053	-				+0.6
3,309,053	-				+3.7
3,309,212	+				-0.7
3,309,215	+				+1.6
3,309,216	-				-0.4
3,309,237	+				-0.3
3,309,238	-				+1.2
3,309,248	-				-2.0
3,309,280	+		PFLU_RS31630	0.11	-0.6
3,309,280	+		PFLU_RS31630	0.11	-2.5
3,309,422	+		PFLU_RS31630	0.71	-1.8
3,309,422	+		PFLU_RS31630	0.71	+1.0
3,309,423	-		PFLU_RS31630	0.71	-0.3
3,309,423	-		PFLU_RS31630	0.71	-0.4
3,309,481	+				+2.7
3,309,517	+				-1.8
3,309,517	+				+2.1
3,309,517	+				-1.6
3,309,517	+				+1.8
3,309,517	+				-0.8
3,309,518	-				+1.2
3,309,518	-				-0.0
3,309,518	-				+1.2
3,309,518	-				+0.6
3,309,518	-				-0.1
3,309,545	+				-1.6
3,309,564	+				-2.8
3,309,565	-				-0.6
3,309,609	+				-0.1
3,309,609	+				+2.8
3,309,609	+				+0.7
3,309,610	-				+0.0
3,309,613	+				-0.7
3,309,613	+				+0.7
3,309,613	+				+2.1
3,309,613	+				-2.1
3,309,614	-				-2.7
3,309,614	-				-0.1
3,309,619	+				+0.6
3,309,619	+				-0.8
3,309,619	+				-2.0
3,309,619	+				-2.4
3,309,619	+				+1.6
3,309,619	+				-2.8
3,309,619	+				+0.5
3,309,619	+				-0.6
3,309,619	+				-1.4
3,309,619	+				-2.0
3,309,619	+				-2.1
3,309,619	+				+0.7
3,309,619	+				+0.6
3,309,620	-				+0.2
3,309,620	-				+1.2
3,309,620	-				-2.0
3,309,620	-				-0.4
3,309,620	-				+1.1
3,309,620	-				-1.4
3,309,620	-				-0.6
3,309,620	-				-0.4
3,309,620	-				-0.2
3,309,620	-				+1.2
3,309,620	-				-2.4
3,309,620	-				-1.6
3,309,620	-				+1.1
3,309,620	-				-0.4
3,309,620	-				+0.8
3,309,620	-				-0.6
3,309,620	-				+1.3
3,309,620	-				-1.4
3,309,623	+				+0.3
3,309,623	+				+1.5
3,309,624	-				+0.9
3,309,624	-				+1.1
3,309,624	-				-1.0
3,309,624	-				-0.6
3,309,624	-				-0.6
3,309,624	-				-1.9
3,309,624	-				+0.5
3,309,624	-				-0.4
3,309,697	+				+1.5
3,309,697	+				+1.3
3,309,697	+				+0.4
3,309,697	+				-0.8
3,309,697	+				+0.3
3,309,698	-				+0.9
3,309,698	-				+2.0
3,309,698	-				+0.2
3,309,769	+				+1.8
3,309,770	-				+1.2
3,309,874	+		PFLU_RS14795	0.13	-2.4
3,309,874	+		PFLU_RS14795	0.13	+1.0
3,309,874	+		PFLU_RS14795	0.13	-0.4
3,309,874	+		PFLU_RS14795	0.13	+1.0
3,309,874	+		PFLU_RS14795	0.13	-0.4
3,309,874	+		PFLU_RS14795	0.13	-1.1
3,309,874	+		PFLU_RS14795	0.13	+2.1
3,309,874	+		PFLU_RS14795	0.13	+0.6
3,309,874	+		PFLU_RS14795	0.13	-0.8
3,309,874	+		PFLU_RS14795	0.13	-0.4
3,309,874	+		PFLU_RS14795	0.13	-0.4
3,309,874	+		PFLU_RS14795	0.13	-2.5
3,309,874	+		PFLU_RS14795	0.13	-0.4
3,309,874	+		PFLU_RS14795	0.13	-1.1
3,309,874	+		PFLU_RS14795	0.13	+0.1
3,309,874	+		PFLU_RS14795	0.13	+0.8
3,309,874	+		PFLU_RS14795	0.13	+0.5
3,309,874	+		PFLU_RS14795	0.13	+0.4
3,309,874	+		PFLU_RS14795	0.13	-1.6
3,309,874	+		PFLU_RS14795	0.13	+1.1
3,309,875	-		PFLU_RS14795	0.13	-0.8
3,309,875	-		PFLU_RS14795	0.13	+0.6
3,309,875	-		PFLU_RS14795	0.13	-0.5
3,309,875	-		PFLU_RS14795	0.13	-2.4
3,309,875	-		PFLU_RS14795	0.13	+0.6
3,309,875	-		PFLU_RS14795	0.13	-0.1
3,309,875	-		PFLU_RS14795	0.13	-0.0
3,309,875	-		PFLU_RS14795	0.13	+2.1
3,309,875	-		PFLU_RS14795	0.13	-2.9
3,309,875	-		PFLU_RS14795	0.13	+0.2
3,309,960	-		PFLU_RS14795	0.18	+1.2
3,309,977	-		PFLU_RS14795	0.20	+1.4
3,310,010	+		PFLU_RS14795	0.22	-0.8
3,310,011	-		PFLU_RS14795	0.22	-3.0
3,310,011	-		PFLU_RS14795	0.22	+1.2
3,310,011	-		PFLU_RS14795	0.22	-2.6
3,310,011	-		PFLU_RS14795	0.22	+1.7
3,310,011	-		PFLU_RS14795	0.22	-0.5
3,310,011	-		PFLU_RS14795	0.22	-0.7
3,310,011	-		PFLU_RS14795	0.22	-3.2
3,310,012	+		PFLU_RS14795	0.22	-2.3
3,310,012	+		PFLU_RS14795	0.22	+0.9
3,310,012	+		PFLU_RS14795	0.22	+2.8
3,310,012	+		PFLU_RS14795	0.22	+1.2
3,310,012	+		PFLU_RS14795	0.22	-1.4
3,310,013	-		PFLU_RS14795	0.22	-1.1
3,310,013	-		PFLU_RS14795	0.22	-0.6
3,310,013	-		PFLU_RS14795	0.22	-0.6
3,310,013	-		PFLU_RS14795	0.22	-0.4
3,310,013	-		PFLU_RS14795	0.22	-0.6
3,310,013	-		PFLU_RS14795	0.22	-2.1
3,310,033	-		PFLU_RS14795	0.23	+0.5